Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1563g00001 ATGTATGCAAATGCATTGAAACTAAACATGTTCCGCAAATTCACTCTCTTCTTTCTGTTCTCTGCAACTGTAGCAACGCTTCTTCTTCCAACTACATGTCATGTGAACTTGAGCACTTCGACTATGTCTCTGGGTCAAAACCACTCAAAAATCGTAAACAAAGTTGATGATGTCTTCATGGGGTGTGATGATAGAAAAAATTGCAGCAGCAGTGCGGATAATAATTCTGGGTCACGGATACTTAATGAAGTGTCACAAAATGCAAGTGACGTGTCACAAAATGACGTGTCACAAAATGACGTTTCACAAAATGAAGTGTCACAAAATGCTAGTGCTACTACTACTGTTACCCAGGTTTGCAAGGGTAAAAGTTGTGTTATTACAACAAACTCAACATCCCAGACATCAGTATCGCCTGTGTCGTCACCAAATTTAAAGTCACCCTCGCCGTCGCCGTCGCCGTTATCATCACTACCGACGCTTTCACCAAGATCATCACCAATTTCATCACCAGTAACAGATTACACATACACAAATAAACACCACCGGAGAAGGATAATTATAATTATTATTATAGGTGTGGTAAGTGCGGTAACTGGAGGACTTTTCTTCATACTTTGTTGTGTTAGACGTAAGTCTTCAACCCGACTGTTCAAATTTTGTTTTACCACAAACAGTGATTCAAATGTCGAAGCTTTCTTAAGAAATCATGGAGCCATAGCGCAGAAAAGATACAAATTTTCAGAAGTGAAGAAAATGACTAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTACAGTATACAAAGGAAAACTACACACGGGTAGCCCTGTGGCTGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCCCATGTTAATATTGTCTCACTTGTTGGATTTTGTTTGGAAGGCCCCAAAAAGGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGATAAGTTCATCTACAACAGAGGGCCAGAAAATATTGTATCTTTGACCTGGGAGAATTTATATCAAATTGCCATAGGAATAGCTCGAGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAAAATCTTGCATTTTGACATAAAGCCACATAATATTCTTTTGGACGAGAATTTTTGTCCTAAAATATCAGATTTAGGACTAGCAAAGCTCTGTCCCAGGAATGAAAGCATTATTTCTATGTCTGATAAAAGAGGAACAATGGGGTATTATGCTCCTGAAATGGTCAATAGACATTTTGGTGGAGTTTCACAAAAGTCTGATGTGTACAGTTATGGAATGATGCTACTGGAAATGGTAGGAGGAAGGAAGAACATTAATCCAGAAGCTAGTCATAAGAGTGAGATATACTTCCCACATTTTGCATACAGAACACTTGATGTAGATAATGATGTGAGACCATATAAAGTGATGAATGCAGAAGAAGATGAGATTGCAAAGAGAATGACTGTAGTTGGCTTATGGTGCATTCAATCGCTTCCAAATGATAGACCTACAATGAGCAGAGTGGTAGATATGTTGGAAGATAACATGAATTCCTTGGAAATGCCTCCAAAACCTCTGTTTTCTTCTCCTACTAGATCAGAAACATAA 1656 0.3865 MYANALKLNMFRKFTLFFLFSATVATLLLPTTCHVNLSTSTMSLGQNHSKIVNKVDDVFMGCDDRKNCSSSADNNSGSRILNEVSQNASDVSQNDVSQNDVSQNEVSQNASATTTVTQVCKGKSCVITTNSTSQTSVSPVSSPNLKSPSPSPSPLSSLPTLSPRSSPISSPVTDYTYTNKHHRRRIIIIIIIGVVSAVTGGLFFILCCVRRKSSTRLFKFCFTTNSDSNVEAFLRNHGAIAQKRYKFSEVKKMTNSFKVKLGQGGFGTVYKGKLHTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVSLVGFCLEGPKKALIYEFMANGSLDKFIYNRGPENIVSLTWENLYQIAIGIARGLEYLHRGCNTKILHFDIKPHNILLDENFCPKISDLGLAKLCPRNESIISMSDKRGTMGYYAPEMVNRHFGGVSQKSDVYSYGMMLLEMVGGRKNINPEASHKSEIYFPHFAYRTLDVDNDVRPYKVMNAEEDEIAKRMTVVGLWCIQSLPNDRPTMSRVVDMLEDNMNSLEMPPKPLFSSPTRSET 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1563g00001 551 FunFam PR5-like receptor kinase 330 540 - -
Vium1563g00001 551 ProSiteProfiles Protein kinase domain profile. 255 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1563g00001 551 FunFam serine/threonine-protein kinase PBS1-like 224 329 - -
Vium1563g00001 551 Gene3D Transferase(Phosphotransferase) domain 1 330 538 - -
Vium1563g00001 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Vium1563g00001 551 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Vium1563g00001 551 PANTHER RUST RESISTANCE KINASE LR10-RELATED 227 545 IPR045874 GO:0004672
Vium1563g00001 551 CDD STKc_IRAK 261 529 - -
Vium1563g00001 551 Pfam Protein kinase domain 258 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1563g00001 551 MobiDBLite consensus disorder prediction 158 175 - -
Vium1563g00001 551 MobiDBLite consensus disorder prediction 133 175 - -
Vium1563g00001 551 SMART serkin_6 255 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1563g00001 551 MobiDBLite consensus disorder prediction 85 108 - -
Vium1563g00001 551 Gene3D Phosphorylase Kinase; domain 1 220 329 - -
Vium1563g00001 551 SUPERFAMILY Protein kinase-like (PK-like) 240 529 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1563g00001 Vium-Chr1563 5234 8612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1563g00001 227 543 Receptor kinase-like Gene Family AT4G18250 57.669 5.18e-124 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium1563g00001 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1563g00001 - - var:108343960 899.042