Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00037 ATGTGTTTGCCAGAGGGAGAGAGAGAGAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTGTTTCCACAATCACAAGACCCATTTGGTGGTTACGGATCAGTGAAGGACTTCTACAACTGCACTTTCTTGGCTGCTACTTCACCTAACTGGGGGGACTATGAACACATCAACATCAACATCCACAAAGAAGAAGAACAAGGTTCCATCTCTACTTTTCTCGATAATAGTAACAACCAACCAGACAATTACCCTTATGGAGGAGATTGGACCAGCTCCTCATCCTCTATCTTACCCCACTTGAATGATCTTCAAGAACCCACAGACCCCAGTAACGCCACTCACAGCTTGGATACCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTCGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTGAAGGAGCTTGAACAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGATGCTGGTGGTGCAACGAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCGCAGTATTCAACAAGTGGTGGTGGTGGTGGTGGCTCTGATAATTCTGCAACCGTAGGTGAAGACGTGGGTGAAGTTAAGTCTGGCATTGCTGACATAGAAGTGACAATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCGAAGCAACTCTTGAAGCTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAATGTTACCACCACCGGTGAAATTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTTGATGATATTGCTGAAGCTGTGTACCAGACGCTGGATAGGATTCAGCAAGAGGCAGTGTTGAATTAA 1029 0.4568 MCLPEGERERERAMALEAVVFPQSQDPFGGYGSVKDFYNCTFLAATSPNWGDYEHININIHKEEEQGSISTFLDNSNNQPDNYPYGGDWTSSSSSILPHLNDLQEPTDPSNATHSLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEGKSDAGGATNMPFSEFFAFPQYSTSGGGGGGSDNSATVGEDVGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQEAVLN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00037 342 MobiDBLite consensus disorder prediction 94 118 - -
Vium1562g00037 342 CDD bHLH_AtFAMA_like 142 214 - -
Vium1562g00037 342 PANTHER MAX DIMERIZATION, MAD 92 339 - -
Vium1562g00037 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 190 IPR011598 GO:0046983
Vium1562g00037 342 Pfam Helix-loop-helix DNA-binding domain 140 191 IPR011598 GO:0046983
Vium1562g00037 342 SMART finulus 145 196 IPR011598 GO:0046983
Vium1562g00037 342 Gene3D - 124 204 IPR036638 GO:0046983
Vium1562g00037 342 MobiDBLite consensus disorder prediction 94 135 - -
Vium1562g00037 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00037 Vium-Chr1562 302143 304506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00037 14 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.963 8.74e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1562g00037 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00037 - - pvu:PHAVU_007G181900g 608.216