Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00034 ATGCTCGCAATGGCTTTGTTACTGCCACCGCTTCTTCTTTCAACTTCCTATCTCAGCACAAGCACCATTGTGGCTCTCTGTGTATTCTTCACCCTCCTAGGCACTTGTGTCATCATTGGCCATCTTCTGGAAGAGAATCGGTGGGCTAATGAATCCATCATTGCCCTCCTTCTGGGGTTGTGTGCTGGGACGGTGGTGTTGTTCGTGACTAACTTTAAAAGTGCCAAGATTTTAATATTCAGTGAAGACTTGTTCTTTCTCTACTTGCTTCCCCCTATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAAGAATTTCACCATTATACTGCTCTTTGGAGTCATTGGAACAGTTATTTCGTTCTGTCTTATATCTGTCGGTGCCCTTATGCTCATTCAATGGATTGGAATATCTAACCTTGGCATAAAAGATTACCTAGCCATCGGTGCCATACTGTCAGCAACGGACTCAGTTTGTACATTGCAGGTTCTCAATCAAGATGAAACACCCTTGCTTTACAGCATTGTATTTGGGGAGGGAGTAGTAAATGATGCCACGTCTATTGTGCTTTTCAATTCGGTCCAATCCCTTGACTTCAGCAGCTCCAATTCTATGACAGCCTTGAAATTGTTGGGGACCTTCCTTTACCTCTTCTGCACTAGTACTGCCCTTGGCATAGCAGTTGGCCTTTTAAGTGCTTATATTTTGAAAAAACTCTACCTGGGAAGGCATTCTACTGATCGTGAACTTGCACTTATGATGTTGTTGGCATATTTATCATATATGATCGCTGAGCTTTTGAGCCTCAGTGGGATATTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACTTGGCACAATGTTACATTAAGCTCAAGGACAACAACCAAGCACGCCTTTGCAACCCTCTCATTCATTGCAGAAACTTTTATATTTATATGTGTTGGCATGGATGCTCTAGACATTGACAAATGGAAAAGCAGTAAAGGCAGTGCAGGAATTTCAGTTGCTGTGAGTTCTACTTTGTTTGCATTAGTGTTGATTGGAAGAGCAGCTTTTGTGTTCCCTATTGCATACATTAAAAATCGTATCAATACAAGAGAGAATACCAGAATTGAATTTCGTTCACAGTTTATCATATGGTGGGCTGGCCTGATGAGAGGTGCAGTGACTATTGCCCTATCTTATAACCAGTTTGCAGAAGCCAAGAGTACATCATCAACTCAAGACTCTGCCTTAATGATCACTTCTTCTATAATTGTGGTCTTGTTCAGCACTGTGGTATTTGGCTCCATTACTAAGCCACTGATAGAGGCTGTGCAACCAAGGCATCCAAAACCAACCAGTTTTGATTCCACTGATAACGTAGAAGATTTGAGATTCCTATTGCTTGAAAACAATGGTCCCATTAACCAAAGCAACAATATGCAAATTCAAAGGCAAAGTAGGATAAGGATGCTAATAAGCCATCCAAGCAAAACTGTTCACTACTTTTGGAGGAAATTCGATGACAAGTTTATGAGACCTGTGTTTGGTGGAAGGGGTTTTGTGCCTTTTGTTCCTGGCGAAGCAGCAGAGATTTTTTGA 1605 0.4143 MLAMALLLPPLLLSTSYLSTSTIVALCVFFTLLGTCVIIGHLLEENRWANESIIALLLGLCAGTVVLFVTNFKSAKILIFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTIILLFGVIGTVISFCLISVGALMLIQWIGISNLGIKDYLAIGAILSATDSVCTLQVLNQDETPLLYSIVFGEGVVNDATSIVLFNSVQSLDFSSSNSMTALKLLGTFLYLFCTSTALGIAVGLLSAYILKKLYLGRHSTDRELALMMLLAYLSYMIAELLSLSGILTIFFCGIVMSHYTWHNVTLSSRTTTKHAFATLSFIAETFIFICVGMDALDIDKWKSSKGSAGISVAVSSTLFALVLIGRAAFVFPIAYIKNRINTRENTRIEFRSQFIIWWAGLMRGAVTIALSYNQFAEAKSTSSTQDSALMITSSIIVVLFSTVVFGSITKPLIEAVQPRHPKPTSFDSTDNVEDLRFLLLENNGPINQSNNMQIQRQSRIRMLISHPSKTVHYFWRKFDDKFMRPVFGGRGFVPFVPGEAAEIF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00034 534 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00034 534 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00034 534 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00034 534 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00034 534 PANTHER SODIUM/HYDROGEN EXCHANGER 26 517 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium1562g00034 534 Pfam Sodium/hydrogen exchanger family 32 444 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium1562g00034 534 Gene3D - 145 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00034 Vium-Chr1562 279067 284932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00034 13 532 Antiporters AT5G27150 61.612 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00034 K14724 - qsa:O6P43_026859 751.125