Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00027 ATGGCAGCAAGACATAATGATAGAAGGGACCAGGAAAATGCGACTAAATCGAAAAAGGTTTCACTTTGGGATGCTTTAAATCTTAAACCTGAAAAAAAAGATTTGTCTTGCTCATCTTCTGCTCATGATTTGAGGCATTTAGAATTGGAGAAAGAGAAAGAGAATGGGGCATCACCAAGAGGAGTCTTAGAAGTATACATGAAAGACTTTGATTCTCGAATATTTACTAAACCAGAAAAAAGTTGTTCAAGCACAAGGGCACACTCTAACTGGACCAATTTTTTCAAACTTTTCAAGAAAAAATCTTTTAAACGGCTAGGGACCCTCTCCAATATTAGTGTTCCAAAGATACCAAAATGGAAAAGCAGAAGTACTAGAGAAAATCACGCTCTTAGCAAGCTATGTAACTTCAACTCTTCTTGGGTCACTTTTAGCCTTTCTGACCTCAGAAAAGCGACCAACAATTTTGACAGTGAAAATATAATCGGAAGAGGTGGTTTTGCTGAAGTTTACAAGGGGTGTCTCGAAGATGGACAATTAGTAGCTGTGAAGAAATTGAATAAAGGAACCACAGAAGAAAAAACTGCGGGCTTTCTATCTGAGTTAGGCGTAATTGCTCACGTTGACCATCCTAATACTGCCAAGCTGGTTGGATGTTGTGTAGAAAGAGAAATGCATCTTGTCTTTGAACTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAACTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTAGTCACGGATAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAGTGGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTCCTGCTTTTGGAGATCATATCCGGGCGCCCAGCGCTGAATGATTTGCAGCAAAATATTGTATTATGGCTGCACATGCATGCATGCAGACCTTAA 1128 0.3839 MAARHNDRRDQENATKSKKVSLWDALNLKPEKKDLSCSSSAHDLRHLELEKEKENGASPRGVLEVYMKDFDSRIFTKPEKSCSSTRAHSNWTNFFKLFKKKSFKRLGTLSNISVPKIPKWKSRSTRENHALSKLCNFNSSWVTFSLSDLRKATNNFDSENIIGRGGFAEVYKGCLEDGQLVAVKKLNKGTTEEKTAGFLSELGVIAHVDHPNTAKLVGCCVEREMHLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILVTDNFEPQICDFGLAKWLPEQWTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIISGRPALNDLQQNIVLWLHMHACRP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00027 375 PANTHER OS08G0249100 PROTEIN 32 367 IPR046958 -
Vium1562g00027 375 Gene3D Phosphorylase Kinase; domain 1 117 230 - -
Vium1562g00027 375 Gene3D Transferase(Phosphotransferase) domain 1 233 374 - -
Vium1562g00027 375 SUPERFAMILY Protein kinase-like (PK-like) 143 374 IPR011009 -
Vium1562g00027 375 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 132 231 - -
Vium1562g00027 375 Pfam Protein tyrosine and serine/threonine kinase 159 366 IPR001245 GO:0004672|GO:0006468
Vium1562g00027 375 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 233 371 - -
Vium1562g00027 375 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Vium1562g00027 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Vium1562g00027 375 SMART serkin_6 156 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00027 375 ProSiteProfiles Protein kinase domain profile. 156 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00027 Vium-Chr1562 230846 235438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00027 143 358 Receptor kinase-like Gene Family AT1G53440 48.402 1.28e-60 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium1562g00027 PK_Tyr_Ser-Thr 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00027 - - gmx:100781529 563.918