Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00025 ATGAGATATAATGGGACATGCAATTACAGGGACCAGGAAAATGCGACTAAATCGAAAAAGGTTTCACTTTGGGATGCTTTAAATCTTAAACCTGAAAAAAAAGATTTGTCTTGCTCATCTTCTGCTCATGATTTGAGGCATTTAGAATTGGAGAAAGAAAAAGAGAATGGGGCATCACCAAGAGGAGTCTTAGAAGTATACATGAAAGACTTTGATTCTCGAATATTTACTAAACCAGAAAAAAGTTGTTCAAGCACAAGGGCACACTCTAACTGGACCAATTTTTTCAAACTTTTCAAGAAAAAATCTTTTAAACGGCTAGGGACCCTCTCCAATATTAGTGTTCCAAAGATACCAAAATGGAAAAGCAGAAGTACTAGAGAAAATCACGCTCTTAGCAAGCTATGTAACTTCAACTCTTCTTGGGTCACTTTTAGCCTTTCTGACCTCAGAAAAGCGACCAACAATTTTGACAGTGAAAATATAATCGGAAGAGGTGGTTTTGCTGAAGTTTACAAGGGGTGTCTCGAAGATGGACAATTAGTAGCTGTGAAGAAATTGAATAAAGGAACCACAGAAGAAAAAACTGCGGGCTTTCTATCTGAGTTAGGCGTAATTGCTCACGTTGACCATCCTAATACTGCCAAGCTGGTTGGATGTTGTGTAGAAAGAGAAATGCATCTTGTCTTTGAACTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAACTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTAGTCACGGATAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAGTGGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTCCTGCTTTTGGAGATCATATCCGGGCGCCCAGCGCTGAATGATTTGCAGCAAAATATTGTATTATGGGCAAAACCTTTGCTTTGTGACAATCATACAAAGGACCTTGTTGATCCTTCACTTGGTGATGATTATGATAAAGGGAAGTTGGGTTGTGTAATTGTAACTGCATCGCTGTGTATTGAACAGAGTCCTATCTTACGCCCCAGAATGAGGCAGATTGTGGCGCTACTAAGAGGGGAACAACATGTTATGAAATCTAAACGAGCAAGTGGAAGGAGACTTTTGGAAAGAACTTACTCAGAAGAGCTCTTAGATGTGCAAGAATACAACTCAACAAAATTTCTAAGAGATCTCAAGCGGCATCAAGAGATTGCATTGGGTCTTGAGAACTAA 1431 0.3857 MRYNGTCNYRDQENATKSKKVSLWDALNLKPEKKDLSCSSSAHDLRHLELEKEKENGASPRGVLEVYMKDFDSRIFTKPEKSCSSTRAHSNWTNFFKLFKKKSFKRLGTLSNISVPKIPKWKSRSTRENHALSKLCNFNSSWVTFSLSDLRKATNNFDSENIIGRGGFAEVYKGCLEDGQLVAVKKLNKGTTEEKTAGFLSELGVIAHVDHPNTAKLVGCCVEREMHLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILVTDNFEPQICDFGLAKWLPEQWTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIISGRPALNDLQQNIVLWAKPLLCDNHTKDLVDPSLGDDYDKGKLGCVIVTASLCIEQSPILRPRMRQIVALLRGEQHVMKSKRASGRRLLERTYSEELLDVQEYNSTKFLRDLKRHQEIALGLEN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00025 476 ProSiteProfiles Protein kinase domain profile. 157 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00025 476 Gene3D Phosphorylase Kinase; domain 1 118 231 - -
Vium1562g00025 476 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 133 232 - -
Vium1562g00025 476 SMART serkin_6 157 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00025 476 SUPERFAMILY Protein kinase-like (PK-like) 133 423 IPR011009 -
Vium1562g00025 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Vium1562g00025 476 Pfam Protein tyrosine and serine/threonine kinase 160 366 IPR001245 GO:0004672|GO:0006468
Vium1562g00025 476 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524
Vium1562g00025 476 Gene3D Transferase(Phosphotransferase) domain 1 234 445 - -
Vium1562g00025 476 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 234 437 - -
Vium1562g00025 476 PANTHER OS08G0249100 PROTEIN 33 465 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00025 Vium-Chr1562 225307 228873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00025 144 429 Receptor kinase-like Gene Family AT1G53420 44.027 4.81e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium1562g00025 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00025 - - gmx:100781529 715.687