Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00021 ATGGCTGGGACTAACGAACTCAACCCCAACGATTCTAAGATGGTGGTTCCGCTGAATATGTGGGTTCTGATCTCAAATTTCAAGTTGGCATACAATCTTCTTCGTCGTCCGGATGGCACTTTCAACCGGGACTTGGCAGAGTTCCTTGATCGGAAAGTTCCGGCAAATGCGAACCCCGTGGATGGAGTGTTCTCTTTTGATGTCATTGTTGACCGTGAAACCAATCTCCTTACGCGAATCTATCGTCCTGCTGAGGGAGAGGAGCGTCCAGTGAGCATTCTTGAGCTTGAGAAACCTGTGAGCTCTGAGGTTGTTCCTGTCATCATATTCTTCCACGGTGGAAGTTTTGCTCATTCTTCGGCCAATAGTGCCATATATGATACGCTATGTCGTCGCCTGGTTGGTATCTGTAAGGCCGTTGTGGTGTCTGTGAACTATAGGCGTGCACCTGAGAATAGGTATCCCTGTGCTTACGATGATGGGTGGACAGCTCTTAAGTGGGTTAGCTCTAGATCTTGGCTTCAGAGTCGGAAAGATAAGAAAGTTCATATCTACATGGCTGGGGATAGCTCGGGTGGGAACATTGTGCACCATGTTGCTCTCAAAGCTGTGGAGTCCGGAATTGAAGTGTTTGGGAATGTTCTGCTCAACCCATTGTTTGGTGGGCAGGAAAGATCCGAGTCGGAGAAGCGTTTAGATGGGAGATATTTTGTAAGAGTGAAGGATCGAGACTGGTATTGGAGGGCTTTTCTTCCTGAAGGGGAAGATAGAGACCATCCTGCATGTAACCCGTTTGGGCCAAAGGGGCAAAGCCTCGAAGGGACTGTCTTTCCCAAGAGCCTTGTAGTGGTTGCTGGTTTAGACCTTGTTCAGGACTGGCAACTGGGTTATGCCAAAGGGCTTGAGAAGGCTGGCCAGGAAGTGAAATTGCTATTCCTGGAGCAAGCAACCATTGGGTTTTACTTGCTGCCAAATAATGAGCACTTCTCTTCTGTTATGGACGAGATAAAATATTTTGTCAGTCCTGACTGTTGA 1035 0.4792 MAGTNELNPNDSKMVVPLNMWVLISNFKLAYNLLRRPDGTFNRDLAEFLDRKVPANANPVDGVFSFDVIVDRETNLLTRIYRPAEGEERPVSILELEKPVSSEVVPVIIFFHGGSFAHSSANSAIYDTLCRRLVGICKAVVVSVNYRRAPENRYPCAYDDGWTALKWVSSRSWLQSRKDKKVHIYMAGDSSGGNIVHHVALKAVESGIEVFGNVLLNPLFGGQERSESEKRLDGRYFVRVKDRDWYWRAFLPEGEDRDHPACNPFGPKGQSLEGTVFPKSLVVVAGLDLVQDWQLGYAKGLEKAGQEVKLLFLEQATIGFYLLPNNEHFSSVMDEIKYFVSPDC 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00021 344 PANTHER ARYLACETAMIDE DEACETYLASE 43 314 - -
Vium1562g00021 344 SUPERFAMILY alpha/beta-Hydrolases 33 337 IPR029058 -
Vium1562g00021 344 FunFam Gibberellin receptor GID1 1 342 - -
Vium1562g00021 344 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 184 196 IPR033140 -
Vium1562g00021 344 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 108 124 IPR002168 GO:0016787
Vium1562g00021 344 Gene3D alpha/beta hydrolase 1 341 IPR029058 -
Vium1562g00021 344 Pfam alpha/beta hydrolase fold 108 321 IPR013094 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00021 Vium-Chr1562 176743 179330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00021 1 344 Carbohydrate Esterase AT3G05120 76.232 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00021 K14493 - gmx:100815161 675.241