Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00019 ATGGAGTGCAACAAAGATGAGGCTGTGAGGACTAGGAAAATGGCCGAAGCTAGAATGCAAAGTGGTGATTTTGTGGATGCACTCAGATTGGCTACCAAGGCTAAAAAGCTGTATGCTGATGTTGAAAACATTACTCAGATTCTTACCATCTGTGAGGTTCACAATGCTGCCAATAAAAAGGTCTCTGCCACTGACATGGACTGGTATGCGATACTTCAGATCGAAAGATTTGCTGATGAAGCAATCATAAAGAAACAGTACAGGAGGCTCGCACTGCTACTTCATCCTGACAAGAACAAGTACGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGGTCTTGAGTGACCAAGAAAAACGTTCTTTGTATGACAGCCGGCTCGGAATCTCTGTAAGAGGTGCTGCGAAGAAATCCACTGCAAAACGTGGTGTAGAAAAATGTCAGAGAAGTTCTGAATCACAACGTAGTTCACATGAGAATGTGTTCACTGCAAAGCGTGATGAGCATGCAACAAATTATCAGAAGAATTCTTACCCTAACTCCGCTGATTCCAACAACCAAGCTGGGCCGACATTCTGGACAACTTGCCCACATTGTAGTGTTAAGTTCGAGTACTCCATACGATATGTGAATGTGAACTTATTGTGTATGCAGTGCATGAAATCATTTAAAGCTCAAGTTTTTAATTTTGGTGCTCCACCGCCACAGCCAAAGTTTACTTCAGTAAATATCCAGAAAGAGGCTCCAATTCCTGGTCCCCCAAAACCAGATTCAGAAAGCACTGTTCAGAAACCCCTTGTTAGAGAACGTACTGCCAGGTTTGTGCGGTCAGATACTACATCTATGAAAAAATGTGCTGCTGGAGTTGGTGCTCATTGTGAAAAGAGTAAAGATGGCTCTGTTCCTGCATCCAAAGTCATGGAGCCACAATGCTCTAAAAATGTTGGAAGTAAGAGAGTAAGACAGTCAGCACCAGATGCAGGAAAAAGCTTCAAAGATAGAAACAGTGGTGAGATGAGAGATGCTAATGTTCAAGAAAATGATCTTGATCATTCAAGAGCTGGTGCAAGGAGATCTTCAAGGAAAAAACAGCGTGTTTCATATACCGAAACCTCTGAAGATGAAGATCTTGAATTTCCTTCCAAATCGCCACGACAAAATGAACCGCCTAAAACCGATGACGTTGAGAATAAGACTGTTCCGGCAACAAATGGAGCGTCCAACAGCAACAATCCAGCTACTTCAACTGCTGGTGTGGCTGATCAGAACACGGAGAATGTATCCGAGTCAAAAGAGCATAACTGCCCTTCACCGGATTCAAATATTCCTTCTAGTCCAAACATCCTTTCTTGTTTTGACGCAGAATTCAATGATTTCGAAATGGACAAGGAGGCGGATCGCTTTGGTGTTAATCAAATATGGGCAGCGTATGATAGCGGTGATGCGATGCCAAGATTTTATGCTATAGTCAAGAAAGTGCTTTCCCCTTTCATGTTGAAGATTACTTGGTTGGAGGCTGATCCAGATGACGATGAAGAGCTTGATTGGCAGGATGCAGATTTGCCTATTGCCTGCGGTAAGTTCAGACTTGGTAGTTCTCAGAAAACTACAGATCGTACTATGTTCTCTCATCAGGTGCGGTGTGTAAAAGAAACTGGCAGAGGTTCTTATATGGTATATCCCCGTAAAGGAGAAACATGGGCAATTTTCAGAGATTGGGATATCAACTGGAGTTCTGATCCAAATAAACATTTAGCGTATGACTATGACTATGTGGAGATCTTATCAGACTTTTCTGAAAACGTGGTCATCGCTGTTGCCTATCTGGGCAAAGTGAAAGGATTTGTTAGCCTCTTTCAGCAAACTTCAGAGAATGGAGCGGTCAATTTTTATGTCCGGCCTCATGAGCTTTATAGGTTCTCGCATCAAATTCCTTCTTATAAGATGTCTGGTAATGAGAGGGAGGGTGTTCCAAGAGGATCTTTTGAATTTGATCCTGCTGCCTTGCCTTCTAATCTCTTTGAAGTTGGTGATTCGGGTAATTTGAAGATGAATAGCTGA 2073 0.4274 MECNKDEAVRTRKMAEARMQSGDFVDALRLATKAKKLYADVENITQILTICEVHNAANKKVSATDMDWYAILQIERFADEAIIKKQYRRLALLLHPDKNKYAGAEAAFKLIGQANGVLSDQEKRSLYDSRLGISVRGAAKKSTAKRGVEKCQRSSESQRSSHENVFTAKRDEHATNYQKNSYPNSADSNNQAGPTFWTTCPHCSVKFEYSIRYVNVNLLCMQCMKSFKAQVFNFGAPPPQPKFTSVNIQKEAPIPGPPKPDSESTVQKPLVRERTARFVRSDTTSMKKCAAGVGAHCEKSKDGSVPASKVMEPQCSKNVGSKRVRQSAPDAGKSFKDRNSGEMRDANVQENDLDHSRAGARRSSRKKQRVSYTETSEDEDLEFPSKSPRQNEPPKTDDVENKTVPATNGASNSNNPATSTAGVADQNTENVSESKEHNCPSPDSNIPSSPNILSCFDAEFNDFEMDKEADRFGVNQIWAAYDSGDAMPRFYAIVKKVLSPFMLKITWLEADPDDDEELDWQDADLPIACGKFRLGSSQKTTDRTMFSHQVRCVKETGRGSYMVYPRKGETWAIFRDWDINWSSDPNKHLAYDYDYVEILSDFSENVVIAVAYLGKVKGFVSLFQQTSENGAVNFYVRPHELYRFSHQIPSYKMSGNEREGVPRGSFEFDPAALPSNLFEVGDSGNLKMNS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00019 690 MobiDBLite consensus disorder prediction 329 359 - -
Vium1562g00019 690 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 249 272 - -
Vium1562g00019 690 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vium1562g00019 690 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vium1562g00019 690 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vium1562g00019 690 SMART dnaj_3 66 123 IPR001623 -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 144 176 - -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 401 450 - -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 144 190 - -
Vium1562g00019 690 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
Vium1562g00019 690 CDD DnaJ 67 120 IPR001623 -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 367 399 - -
Vium1562g00019 690 Pfam DnaJ domain 67 128 IPR001623 -
Vium1562g00019 690 Pfam Domain of unknown function (DUF3444) 451 657 IPR024593 -
Vium1562g00019 690 Gene3D DnaJ domain 52 156 IPR036869 -
Vium1562g00019 690 MobiDBLite consensus disorder prediction 291 450 - -
Vium1562g00019 690 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00019 Vium-Chr1562 156982 159778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00019 7 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 32.018 2.42e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00019 - - gmx:102662460 900.968