Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00017 ATGGAGTGCAACAAGGATGAGGCTTTGAGGGCCAGAAAAATTGCTGAAGCTAGAATGCAAAGTGGTGAATTTCAAGAGGCTCTCAAGTTTGCTACCAAGGCCAAAAACCTTTATCCGGATGTGGGAAACATCAGCCATGTTCTTACGATTTGTGAGGTTCATAATGCTGCACAGAGAAAACTCTCTCCCTCTGAAATGGATTGGTATGCGATTCTTCAGATTGAAAGACTGGCGGATGAAACAGCCATAAAGAAACAGTACAAGAGGCTTGCACTCCTACTTCATCCTGATAAAAATAAGTTTGGTGGTGCAGAAACTGCTTTCAAATTGGTTGGGCAAGCCAATGGGGTTTTGAGTGACCAAGCAAAACGTTCTTTGTATGACAAGCAGTTTGCTGTCTCTGTGAAAAGCCGACCTGTGCCGAAATCCGCGGATTCCAAGAAGAAAGCTGACCAGAATACATTCTGGACATGTTGCCAACATTGTAAAACTAACTACCAGTTGTTCATGCCGTTTGTGAATTCAACCATAAGCTGCAAACAGTGTTTGAAGTTCTTTAAAGCTTGTGCTATTCCTTTGGTAAATATCCAGAAGAAGTCTCCAATGCATGGTCCCCGAAAACCAGCCTCTGAAAGTACCGGTGGAAAAACCCCTGGTGGAGGAGAACATGCTAGTGCGTTTGTAAGGCCAAATCCTATGTCTATGAAAAAATGTTCTTCTGGCGTTGGTGGTCCTCCATGCACAGGCGCGGAATCACAAACTTCTAAAAATGTTGGAAGTAAAAGAGTTAGGCAGTCAGCACCAGACTCAGGAAAAAGTTTCAAAGCTGGTAATATTTATGAGATGAAAGATGCTTATGTTCGAGAAAACGATATTGATCCTTCAGGACTTGATGCAGGGAGATCTTGTAGACAAAAGCAACATGTTTGA 930 0.4269 MECNKDEALRARKIAEARMQSGEFQEALKFATKAKNLYPDVGNISHVLTICEVHNAAQRKLSPSEMDWYAILQIERLADETAIKKQYKRLALLLHPDKNKFGGAETAFKLVGQANGVLSDQAKRSLYDKQFAVSVKSRPVPKSADSKKKADQNTFWTCCQHCKTNYQLFMPFVNSTISCKQCLKFFKACAIPLVNIQKKSPMHGPRKPASESTGGKTPGGGEHASAFVRPNPMSMKKCSSGVGGPPCTGAESQTSKNVGSKRVRQSAPDSGKSFKAGNIYEMKDAYVRENDIDPSGLDAGRSCRQKQHV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00017 309 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vium1562g00017 309 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vium1562g00017 309 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vium1562g00017 309 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vium1562g00017 309 MobiDBLite consensus disorder prediction 199 275 - -
Vium1562g00017 309 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Vium1562g00017 309 CDD DnaJ 67 120 IPR001623 -
Vium1562g00017 309 MobiDBLite consensus disorder prediction 246 267 - -
Vium1562g00017 309 Gene3D DnaJ domain 64 176 IPR036869 -
Vium1562g00017 309 PANTHER BNAC03G44070D PROTEIN 1 251 - -
Vium1562g00017 309 Pfam DnaJ domain 67 128 IPR001623 -
Vium1562g00017 309 SMART dnaj_3 66 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00017 Vium-Chr1562 153176 154553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00017 4 246 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.439 7.88e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00017 - - pvu:PHAVU_007G183700g 470.314