Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00011 ATGGTCTTTGAAATCAGTTCTGTTGTTTCAAAGTTGCAAATGGTATCCACTTCGGACCATTCCTCCGTTGTCTCCATGAACTTATTTGTGGCTCTTCTTTGTGCTTGTATTGTCATTGGTCATCTTCTTGAGGAGAATCGGTGGATGAATGAGTCTATCACTGCCCTTTTGATTGGTATTTCCACTGGCGTAGTCATTTTGCTGTTTAGTGGTGGTAAAAGCTCACATATTCTTGTTTTCAGTGAAGATCTTTTCTTCATATACCTTCTGCCGCCTATAATATTCAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATATTATTTGGTGCTATTGGTACATTAATATCTTGTGCAGTCATAACTTTGGGTGCGTCACAAATTTTTGAGAAGTTGGATATTGGTCCACTGGAATTAGGGGATTACCTAGCAATTGGTGCAATATTTGCTGCGACGGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGACGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCACATAGACCCTTCAATAGCTTTGCACTTTTTGGGCAATTTCTTGTATTTATTTGTCGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTCAGTGCTTATATTATCAAAAAGCTGTACATTGGAAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCGTACCTATCCTACATGCTAGCTGAATTATGCTATCTAAGTGGCATCCTCACTGTATTCTTTTGTGGGATTGTTATGTCTCATTATACCTGGCATAATGTGACCGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCATTTGTTGCTGAGATCTTTATCTTCCTTTATGTGGGTATGGATGCCTTGGACATTGAAAAATGGAAATTCGTCAGTGATAGTCCTGGAACATCTATTGCAGCTAGTTCAGTATTGTTGGGCCTAGTTCTTGTTGGAAGAGCAGCCTTTGTTTTCCCCTTATCCTTTCTATCCAACTTGGCTAAAAAATCACCGAATGAGAAAATTAGCTTCAGACAGCAAGTGATTATTTGGTGGGCTGGTCTTATGAGGGGAGCTGTTTCAATGGCACTTGCATATAATCAGTTCACCATGTCGGGGCATACTTCACTGCGAAGCAATGCAGTCATGATCACTAGCACCATCACTGTTGTACTTTTCAGCACGGTGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGCTTTTACTACCTCATACTCCAAATCACAAAGAAATAAACATCGTGATAGCAACAGATGCATCTACTCCAAAATCAGCCACTGTCCCACTTCTTGGGAGTGCCCAAGACTCTGAAGTCGATATTGATCCAATCCATCGTCCAAGCAGCATCCGCGCATTGCTTAGAACTCCAACACACACTGTTCATCGTTTGTGGCGTAAGTTCGATGATGCATTCATGCGTCCTGTTTTCGGTGGAAGGGGTTTTGTTCCTGTAGAACCTGGCTCTCCATCTGAACGTAATGGTCATCAATGGCGTTGA 1629 0.4174 MVFEISSVVSKLQMVSTSDHSSVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGISTGVVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIILFGAIGTLISCAVITLGASQIFEKLDIGPLELGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNHIDPSIALHFLGNFLYLFVASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLVLVGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRSNAVMITSTITVVLFSTVVFGLMTKPLIRLLLPHTPNHKEINIVIATDASTPKSATVPLLGSAQDSEVDIDPIHRPSSIRALLRTPTHTVHRLWRKFDDAFMRPVFGGRGFVPVEPGSPSERNGHQWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00011 542 PANTHER SODIUM/HYDROGEN EXCHANGER 16 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vium1562g00011 542 NCBIfam sodium/hydrogen exchanger 3 24 451 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00011 542 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium1562g00011 542 Gene3D - 146 197 - -
Vium1562g00011 542 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00011 542 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00011 542 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vium1562g00011 542 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00011 Vium-Chr1562 115146 121820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00011 6 540 Antiporters AT3G05030 76.994 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00011 - - gmx:100816746 967.222