LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1562g00009	ATGGGGTGTATAATTGGCAAAGAAGTATCATCGGGAATTATCTCCGAGGTGAAAGAGGAGAAGAGTGTGAGTGTTGAATCCAACGAGAAAGTTGATGAAGTGGCCACAAGCAGAGCTGAGGAGAACGTGGGAGAGGCTCTGAACGGTAAGAAGGAGAAGGAAGAGAATGGTGGTAGCGATGGAGTCCGGGGAACGAAGGGTGATAGAAGAAGGTCAAGGTCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCGCGAAGGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGCCTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACACATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGAAACGTACTTCACCGTGATATAAAAGGATCAAATCTTCTTATTAACGATGAAGGGATACTTAAAATTGCTGACTTTGGCCTTGCAACTTTCTTTGATCCAGACCGCAGGCATCCCATGACTAGTCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACTGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCAACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCATCTTTTCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAATGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTCTTAGTCTTCCAAAATATCCACCAACAAAGGAAATGGATGCTAAAAGACGGGATGATCAAGCAAGGAGATCAAGAGCTGCAGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGATTCGCGATCGCGCTGCCAAACCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAATGTGGATAGAAGGAGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTATTCCTTCTGACATCTCTCTGGGTTCAACCTCGTACACCTATTCAAAGGAATCATTCCAAGCTTGGTCAGGTCCAATTGGTAATCCTGCCAACATTAGTAAGCAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAGGGAACTCTTAAGCATAAAGTTAAAGGAAAGAAAATCCCAGCCTAG	1743	0.4349	MGCIIGKEVSSGIISEVKEEKSVSVESNEKVDEVATSRAEENVGEALNGKKEKEENGGSDGVRGTKGDRRRSRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRRADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHNRNVLHRDIKGSNLLINDEGILKIADFGLATFFDPDRRHPMTSRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPRQPYRRCIRETFKDFPPSSFPLIETLLAIDPAERKNASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDQARRSRAAGKTGVDGPKKHRIRDRAAKPAPAPEANAELQSNVDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTYSKESFQAWSGPIGNPANISKQKKHTTGDDALDLSKSYKGTLKHKVKGKKIPA	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1562g00009	580	SMART	serkin_6	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1562g00009	580	ProSiteProfiles	Protein kinase domain profile.	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	537	560	-	-
	Vium1562g00009	580	Pfam	Protein kinase domain	119	403	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	18	67	-	-
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	421	458	-	-
	Vium1562g00009	580	FunFam	probable serine/threonine-protein kinase At1g54610	202	443	-	-
	Vium1562g00009	580	CDD	STKc_CDK9_like	119	403	-	-
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	413	507	-	-
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	470	494	-	-
	Vium1562g00009	580	Gene3D	Transferase(Phosphotransferase) domain 1	202	442	-	-
	Vium1562g00009	580	SUPERFAMILY	Protein kinase-like (PK-like)	113	409	IPR011009	-
	Vium1562g00009	580	PANTHER	CELL DIVISION PROTEIN KINASE	117	407	-	-
	Vium1562g00009	580	MobiDBLite	consensus disorder prediction	18	91	-	-
	Vium1562g00009	580	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Vium1562g00009	580	Gene3D	Phosphorylase Kinase; domain 1	106	201	-	-
	Vium1562g00009	580	ProSitePatterns	Protein kinases ATP-binding region signature.	125	148	IPR017441	GO:0005524
	Vium1562g00009	580	FunFam	probable serine/threonine-protein kinase At1g54610	106	201	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1562g00009	Vium-Chr1562	84006	89372	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1562g00009	111	441	Core Cell Cycle Gene Families	AT5G10270	52.161	6.48e-118	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium1562g00009		Pkinase	3.4e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1562g00009	K08819		-	gmx:100817289	974.541