Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00008 ATGGGGTGTATAATTGGCAAAGAAGTATCATCGGGAATTATCTCCGAGGTGAAAGAGGAGAAGAGTGTGAGTGTTGAATCCAACGAGAAAGTTGATGAAGTGGCCACAAGCAGAGCTGAGGAGAACGTGGGAGAGGCTCTGAACGGTAAGAAGGAGAAGGAAGAGAATGGTGGTAGCGATGGAGTCCGGGGAACGAAGGGTGATAGAAGAAGGTCAAGGTCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCGCGAAGGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGCCTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACACATCAACTGCTATCAGGACTTGAGCACTGTCATAATCGAAACGTACTTCACCGTGATATAAAAGGATCAAATCTTCTTATTAACGATGAAGGGATACTTAAAATTGCTGACTTTGGCCTTGCAACTTTCTTTGATCCAGACCGCAGGCATCCCATGACTAGTCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACTGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCAACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCATCTTTTCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAATGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTCTTAGTCTTCCAAAATATCCACCAACAAAGGAAATGGATGCTAAAAGACGGGATGATCAAGCAAGGAGATCAAGAGCTGCAGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGATTCGCGATCGCGCTGCCAAACCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAATGTGGATAGAAGGAGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTATTCCTTCTGACATCTCTCTGGGTTCAACCTCGTACACCTATTCAAAGGAATCATTCCAAGCTTGGTCAGGTCCAATTGGTAATCCTGCCAACATTAGTAAGCAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAGGGAACTCTTAAGCATAAAGTTAAAGGAAAGAAAATCCCAGCCTAG 1743 0.4349 MGCIIGKEVSSGIISEVKEEKSVSVESNEKVDEVATSRAEENVGEALNGKKEKEENGGSDGVRGTKGDRRRSRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRRADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHNRNVLHRDIKGSNLLINDEGILKIADFGLATFFDPDRRHPMTSRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPRQPYRRCIRETFKDFPPSSFPLIETLLAIDPAERKNASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDQARRSRAAGKTGVDGPKKHRIRDRAAKPAPAPEANAELQSNVDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTYSKESFQAWSGPIGNPANISKQKKHTTGDDALDLSKSYKGTLKHKVKGKKIPA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00008 580 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00008 580 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00008 580 MobiDBLite consensus disorder prediction 537 560 - -
Vium1562g00008 580 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00008 580 MobiDBLite consensus disorder prediction 18 67 - -
Vium1562g00008 580 MobiDBLite consensus disorder prediction 421 458 - -
Vium1562g00008 580 FunFam probable serine/threonine-protein kinase At1g54610 202 443 - -
Vium1562g00008 580 CDD STKc_CDK9_like 119 403 - -
Vium1562g00008 580 MobiDBLite consensus disorder prediction 413 507 - -
Vium1562g00008 580 MobiDBLite consensus disorder prediction 470 494 - -
Vium1562g00008 580 Gene3D Transferase(Phosphotransferase) domain 1 202 442 - -
Vium1562g00008 580 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Vium1562g00008 580 PANTHER CELL DIVISION PROTEIN KINASE 117 407 - -
Vium1562g00008 580 MobiDBLite consensus disorder prediction 18 91 - -
Vium1562g00008 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vium1562g00008 580 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Vium1562g00008 580 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Vium1562g00008 580 FunFam probable serine/threonine-protein kinase At1g54610 106 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00008 Vium-Chr1562 84006 89372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00008 111 441 Core Cell Cycle Gene Families AT5G10270 52.161 6.48e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium1562g00008 Pkinase 3.4e-62 CL0016