Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00005 ATGCCTGTTCCCAACGGCGAAGAGCGAGTTCTGTTTGCTTCGGAAAATGCAAGTGAGGTTTCAAAGTCACCCTCGTTGGATTTGAACCCAGATTCAGATTCAGTTGATGGGTCCCCACCTGTTTCCACCGTTTACACTGATGTGGGTGTCGTGCCAGAACACCAAAAGAACGAGCTTGAGCACTTTATATCCAATTTAGAAAGAGAAATAGAGGAGTTGAGGGTCAACCAGAAGAAATTGGATAAAAAGCGTAGAGAAGCACTGAGCAAGATATTGGACATCAAAGGGAGCATTCGAGTATTTTGTAGAATTCGACCAAATCTGGTAACGGAGAAGAGAAGAATTGCTGAACCGGTATCAGCTGGACCAGAAAAAATTCGGGTTAAGTGGGGAGGAACAAAGAAAGATTTTGAGTTTGATAAAGTTTTTACTCAAGAAACAAGCCAAGAAAGTGTTTTTGTTGAGGTTGAGCCAATTCTGAGATCTGCAATGGACGGGCACAATGTATGTGTGTTTGCTTACGGTCAAACAGGCACAGGCAAGACATTCACCATGGATGGTACAAACGAGCAACCTGGGATTATTCCGCGTGCTCTTGAAGAGCTCTTTCATCAAGCCTCTTTGGATAGCTCATCTCCTTTCACCTTTTCGATGAGCATGTTAGAAGTTTATATGGGCAATCTCAGGGATTTGCTAGCTCCAAAACCGTCTGGTAGACCACATGAACAACCTATGACGAAGTGCAATCTCAATATCCAAACCGATCCAAAGGGGTTGATTGAAATTGAGGGTCTCTCTGAAGTTCAAATAAGTGATTATGCTAAAGCGAAATGGTGGTACAACAAGGGTAGAAGGTTCAGATCCACCTCGTGGACTAATGTGAATGAAGCATCAAGCAGGTCACACTGCTTAACGAGGATAAGCATATTTCGACGTGGGGATGCTTTGGAAGCTAAAAGTGAAGTAAGCAAACTGTGGATGGTTGATCTTGGTGGCAGCGAACGGTTGCTTAAAACTGGAGCCAAAGGACTGACACTGGATGAGGGCAGAGCCATTAATCTTTCTCTTTCAGCTTTAGCTGATGTTGTTGCAGCTTTGAAAAGGAAGAGGGGCCATGTGCCTTACAGGAATAGCAAGCTGACTCAATTACTCAAAGATTCTCTTGGGTATGGCTCAAAGGTTTTGATGCTCGTGCATATAAGCCCATCTGAAGAAGATGTCTGTGAGACAATTTGCTCCTTGAACTTTGCAAAGAGAGCGAGAGCAATAGAGTCCAACAAAGAAGTGTCCGTGGAAGTGAAGAAGCAAAGGGAGAAGAAGATTATGGAGCTAGAGGAAGACATCAAGGAAGCTGAAAAACAACGGCAGAATTTAAGGGAACAAACAGAGAAGATTGAGTTGAAGTTAAATGATAGTAAAAAGCTCATATCAATGACAGATAGTCCTGTGGAAAGTGATGACATGAAAGCCTCAATTAGTCCCCAAGATGATGTGAAAGAGGTGATTGAAACTCCCAAAGCATCTAAGAAGCCCATCAAAAGAAACTTCTCCAACTCAATGCCTCGATTCATGACTTCAACAGTGGCAAGTCGCCAAAGGCAAAGTGCTGCAGAGCGAGACATTGGCACTGTGAAATTGAAAAGCCATAGATCAACAATGGTGTCGAGAAGTTCCATCCATTTTTCGTATTCCCAATCGTTGAGTTATTCAGATATCCGCATCAAAGCATTGCTGCGAAGTTCAAATGGAAAATCTCGGCATGCTGAAGCAGATAGTGTTCCAATTCCGGAGCCTGTTCTCACAGAAAGGCCTAAATGCAATGATTTGGAATCAAAAGTCACAACCCCTCGAAGCAGGATGGTTACATCTTCAGACCAAAGCTTGAGATTTTCGCTGGGTCGTCACAGAAGAAGGATGTCTGATCTGATCTGA 1932 0.4332 MPVPNGEERVLFASENASEVSKSPSLDLNPDSDSVDGSPPVSTVYTDVGVVPEHQKNELEHFISNLEREIEELRVNQKKLDKKRREALSKILDIKGSIRVFCRIRPNLVTEKRRIAEPVSAGPEKIRVKWGGTKKDFEFDKVFTQETSQESVFVEVEPILRSAMDGHNVCVFAYGQTGTGKTFTMDGTNEQPGIIPRALEELFHQASLDSSSPFTFSMSMLEVYMGNLRDLLAPKPSGRPHEQPMTKCNLNIQTDPKGLIEIEGLSEVQISDYAKAKWWYNKGRRFRSTSWTNVNEASSRSHCLTRISIFRRGDALEAKSEVSKLWMVDLGGSERLLKTGAKGLTLDEGRAINLSLSALADVVAALKRKRGHVPYRNSKLTQLLKDSLGYGSKVLMLVHISPSEEDVCETICSLNFAKRARAIESNKEVSVEVKKQREKKIMELEEDIKEAEKQRQNLREQTEKIELKLNDSKKLISMTDSPVESDDMKASISPQDDVKEVIETPKASKKPIKRNFSNSMPRFMTSTVASRQRQSAAERDIGTVKLKSHRSTMVSRSSIHFSYSQSLSYSDIRIKALLRSSNGKSRHAEADSVPIPEPVLTERPKCNDLESKVTTPRSRMVTSSDQSLRFSLGRHRRRMSDLI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00005 643 Coils Coil 56 90 - -
Vium1562g00005 643 MobiDBLite consensus disorder prediction 582 602 - -
Vium1562g00005 643 MobiDBLite consensus disorder prediction 16 41 - -
Vium1562g00005 643 SMART kinesin_4 95 431 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 PANTHER KINESIN-LIKE PROTEIN KLP-3 57 564 IPR027640 GO:0003777|GO:0007018
Vium1562g00005 643 Gene3D Kinesin motor domain 92 469 IPR036961 -
Vium1562g00005 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 464 IPR027417 -
Vium1562g00005 643 ProSiteProfiles Kinesin motor domain profile. 97 423 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 MobiDBLite consensus disorder prediction 15 41 - -
Vium1562g00005 643 Pfam Kinesin motor domain 127 423 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 PRINTS Kinesin heavy chain signature 292 309 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 PRINTS Kinesin heavy chain signature 373 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 PRINTS Kinesin heavy chain signature 324 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 PRINTS Kinesin heavy chain signature 166 187 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium1562g00005 643 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 50 425 - -
Vium1562g00005 643 Coils Coil 434 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00005 Vium-Chr1562 49482 53438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00005 69 423 Calmodulin-binding Proteins AT5G65930 40.443 7.05e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00005 - - gmx:100785581 1094.34