Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1562g00004 ATGAGTGAGAGAGTGAAGAAGGAAAAGCCGACGGAGAAAAGAGAGAGGATGAAAAACATCTTCAAGAAGCTTCACATAGGTGGCAACCACGATCCTCAGCGATCCAATGACAATTCGCCACCTGTGCCGTCGCCGTCATGCGCCGCCGATCACTCTCAAAGCTCCGGTGCCACTCCTGCGAGTCCCTCGTCGGCCTCGGCTACAGCGTCGGCCTCCACCGCCGTGGTTAGTCCCGCCGGTGGCATGAGCCCGGTGGTGAATCGGCAGGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTGCAGCTAGCCCTAGCTATCAGCGCTTCCAATTCGGAGTTCCGCGACGATCCTGAGAAGGATCAGATCCACGCGGCGACGTTGTTTAGTCTAGGAGGTCTTCGAATCGATTCGGTGAGGGACAAGGACGACGCGTCGGAGGCGCTGTCGAGGCAGTACTGGGAATATAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTATATGGGCCCTCTAATGATTCAGTGATGCAAGGAAAGATGCCATCTCGAACGGATCTTGAAGCAAATCCTGGAGGTTCTGAGGTGGTCATTGTTAATAGAACAATTGATCCTGCACTGGAAGAACTGATACAAATTGCACAATGTATTGCATTAGACTGCCCAGTCACTAGTTTGGCACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTAATATTATGTTAGCAAGATGGACAGAAACAAGAGCAGAGTTAAGGACAAATCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGACATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAACATGCCTTGTAGACTGGTAAAAGGGAGTCATTACACTGGTGTGGAGGATGATGCTGTCAACATTATAAAATTGGAGGGTGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCACTTATGCCAGCTGATATTTTGAGCACCAAGGATAGTGCCTTTAACAAGGCTTTTAATCCCAAGATTTTACCCAATTTACCTTCCTCCAAGGATACTGAATTTTCTTACTCCAGACCTATCGAACCGTCTCATGGTGAAGGTAGTAGTCAAAATCCTGTGATAAAAGATCATTCACTGCCTTGGAATGGAAAATCATATGTTGAGAAGTCAGAGCCTTCAAACATAGGTTTGAGAAGAGACACTGGCGTTGGTCCTTCTAAAATTTCTAATAGAGGGACCCCTAATCAACTGGAGAATTTGCCTGCCATGTCTAGTACTTCTCTGTACAAAGGGACCCTCGGAATGAATACAATTGGTGATGGGACGAGACTTAATGTCAATGTTGTACCATATACTCAAAACAGCTCCAATGACCCTCGAAACCTTTTTGCAGATCTTAACCCATTCCAAATAAAAGGAATGGGGAAGGCCTCTGGGCTTAACAAACCCGTAGAAATTAAACCTCATGAGATTAAAAGTACTAAAAATAATACTGTTTCTGGTCGGCCCCCAGTGCTACTGACAAAAAAGAACCGTCATGCCTATAATGAAGACCCCAGGAAAACTAATTATAACCCTAATGAGTACAAACCTCCCTTGTTTGTTTCCAATGGTTCTTCTACATCTGAAAATGTTGACCTTAGTTCCAAACCATTATATAATTCAAATTTAAATAATGATGTAAATGTTCAAACTTTGGCACATGGTACTGGTTCAGTTTCATCATCTGTACCTGAACTGAACCAGATTGAGGATCACAATGCTGATTTTAACCAGGGGGATCTGGAAAATTCTCAAAACTTCATGGTAGAGGCAGTTAGAGAACCAGATAATGCCGAAATCAGACATCATGACCGGAGGAAGCATACTTATGATAGATTCATGGGAAACAATCTCAAACTAAAGGAACCAGAGAGTCCTAGCTCATCAATTGATTCCATCACAAACAGGGTGGATCAAATATTGGATGATGTAGACGTTGGTGAATGTGAGATTCCATGGGAGGATCTGTTTCTTGGTGAAAGAATTGGTATAGGTTCATACGGTGAGGTATACCATGCCGACATGAATGGCACAGAGGTTGCTGTAAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCATTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGATTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCTAATCTTTCAATCATTTCAGAGTATTTACCAAGAGGAAGCTTGTACAGATTACTTCATCGCCCTAATTGTCAGATCGATGAGAAACGAAGAATAAAAATGGCTTTGGACGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTATAATTGTTCACCGAGATCTAAAGTCTCCGAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGGTTGTCAAGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCTACTGCTGGAACGCCGGAGTGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAAAAATGCGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTTGCTACACTAAGGTTGCCGTGGACTGGAATGAATCCTATGCAAGTTGTTGGTGCTGTTGGTTTTCAAAATCGTAGACTTGAAATTCCTAAGGAAGTCGATCCTATAGTTGCAAGAATAATCTGGGAGTGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCACAACTCACAGTGGCTCTAAAGCCTCTGCAGCGTCTGGTTATGCCATCGCATCAAGACCAGGTACCTCCACTCGTGCCGCAGGAGATTTCTGTAAATTCCACCCCATGA 2913 0.4387 MSERVKKEKPTEKRERMKNIFKKLHIGGNHDPQRSNDNSPPVPSPSCAADHSQSSGATPASPSSASATASASTAVVSPAGGMSPVVNRQDFFSSEEEFQVQLALAISASNSEFRDDPEKDQIHAATLFSLGGLRIDSVRDKDDASEALSRQYWEYNVLDYEEKVVDGFYDVYGPSNDSVMQGKMPSRTDLEANPGGSEVVIVNRTIDPALEELIQIAQCIALDCPVTSLAQRLAELVTSHMGGPVKDANIMLARWTETRAELRTNLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEGEREFLVDLMAAPGTLIPLMPADILSTKDSAFNKAFNPKILPNLPSSKDTEFSYSRPIEPSHGEGSSQNPVIKDHSLPWNGKSYVEKSEPSNIGLRRDTGVGPSKISNRGTPNQLENLPAMSSTSLYKGTLGMNTIGDGTRLNVNVVPYTQNSSNDPRNLFADLNPFQIKGMGKASGLNKPVEIKPHEIKSTKNNTVSGRPPVLLTKKNRHAYNEDPRKTNYNPNEYKPPLFVSNGSSTSENVDLSSKPLYNSNLNNDVNVQTLAHGTGSVSSSVPELNQIEDHNADFNQGDLENSQNFMVEAVREPDNAEIRHHDRRKHTYDRFMGNNLKLKEPESPSSSIDSITNRVDQILDDVDVGECEIPWEDLFLGERIGIGSYGEVYHADMNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRLLHRPNCQIDEKRRIKMALDVARGMNCLHTSTPIIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLEIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVMPSHQDQVPPLVPQEISVNSTP 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1562g00004 970 Pfam Ethylene-responsive protein kinase Le-CTR1 145 338 - -
Vium1562g00004 970 Gene3D Phosphorylase Kinase; domain 1 682 766 - -
Vium1562g00004 970 PRINTS Tyrosine kinase catalytic domain signature 802 820 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 PRINTS Tyrosine kinase catalytic domain signature 849 859 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 PRINTS Tyrosine kinase catalytic domain signature 912 934 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 PRINTS Tyrosine kinase catalytic domain signature 763 776 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 PRINTS Tyrosine kinase catalytic domain signature 868 890 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 Pfam Protein tyrosine and serine/threonine kinase 691 939 IPR001245 GO:0004672|GO:0006468
Vium1562g00004 970 SUPERFAMILY Protein kinase-like (PK-like) 679 961 IPR011009 -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 529 548 - -
Vium1562g00004 970 CDD STKc_MAP3K-like 695 938 - -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 368 439 - -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 1 66 - -
Vium1562g00004 970 Gene3D Transferase(Phosphotransferase) domain 1 768 952 - -
Vium1562g00004 970 ProSitePatterns Protein kinases ATP-binding region signature. 695 717 IPR017441 GO:0005524
Vium1562g00004 970 FunFam Serine/threonine-protein kinase isoform 1 680 767 - -
Vium1562g00004 970 ProSiteProfiles Protein kinase domain profile. 689 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00004 970 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 948 - -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 425 439 - -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 368 395 - -
Vium1562g00004 970 MobiDBLite consensus disorder prediction 31 66 - -
Vium1562g00004 970 SMART serkin_6 689 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1562g00004 970 FunFam Serine/threonine-protein kinase CTR1 768 951 - -
Vium1562g00004 970 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Vium1562g00004 970 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1562g00004 Vium-Chr1562 36609 45978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1562g00004 17 925 MAP Kinase Kinase Kinase AT1G08720 56.443 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium1562g00004 PK_Tyr_Ser-Thr 1.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1562g00004 - - gmx:100818780 1655.57