Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1561g00001 ATGACGAGATCAGCGACTGGAACTGGCAAACTACTGCCATTTATAGGAATGATGGTGGCTATGCTGGGTCAAAGTGGCAGCATGGTGGTGATCAAGGTTGCTATTAAGGATATCAATGAATATGTCATGGTTGTCTACACTTTTGCACTCTCTGCTATCTTGGTTCTTCCCTTTGCCGTGTTTCTCCACAGGAGGTCACAAAGTCCTCCTATCAATTTCGTTGCACTTTGCAGATTCTTTTTGCTCGCTTCCTTTGGGAGTTTAGGAACTATACAGGCTTATGTTGGCATAGATCTGAGCTCGCCTGCACTGTTATCAGCTATTCTTAACCTCATGCCAGCTTTCACTTTTATACTTGCTCTCATCTTCAAGATGGAGCAAGTGCATTGGAGGACTTCTAGCAGCCAAGCTAAAGTGTTAGGAACACTAGTATCAATTGCAGGAGCGTTTGTTGTGATACTGTATAAGGGTCCAATCATCTATAGGTCACATTCGGACAACTTTTCTAACGAAACGGTTCAATTTTCGTCAGAACTAAATTGGATCTTGGGAGGGATAATGTGTGTTCTCGATGCACTCTTTACTTCCTTGTGGTACATATATCAGGCTTCAGTAGGAGACACGTACCCTACTATGGATGTCTCGGTCATTGTATTCTTCCAATTCTTATTTTCAATGCTGCAGTGTGGAGCATATGCTTTCTTTGCTGTGAAGGATTTATCCGAATGGAAACTCAAGGTGGATATAGGGTTGATCGGCATTCTATATCAGGCAATAATTGCAACATTGCTGCGTTACCTCCTCGTCATGTGGTGCATAGTTAAAGCGGGCCCTTTGTTTTGTGCTTTGTTTCAACCTGTGGCAATCATTTTCACAGTTTGGATGGGTGCAATCTTTCTTGGAGACGATTTCAGTCTCGGAAGTTTGGTTGGTGCGGCTATAATCGTGATCGGATTTTATGCTGTTCAGTGGGGAAAATCGAAAGAGGAGTACGAGATTGCGAAAGGCGTTGAGCACTTGGACACGGAATCACTGAGCCATGATGGTGTTCCTTTATTGGCAGATAGGAACACGTAG 1077 0.4345 MTRSATGTGKLLPFIGMMVAMLGQSGSMVVIKVAIKDINEYVMVVYTFALSAILVLPFAVFLHRRSQSPPINFVALCRFFLLASFGSLGTIQAYVGIDLSSPALLSAILNLMPAFTFILALIFKMEQVHWRTSSSQAKVLGTLVSIAGAFVVILYKGPIIYRSHSDNFSNETVQFSSELNWILGGIMCVLDALFTSLWYIYQASVGDTYPTMDVSVIVFFQFLFSMLQCGAYAFFAVKDLSEWKLKVDIGLIGILYQAIIATLLRYLLVMWCIVKAGPLFCALFQPVAIIFTVWMGAIFLGDDFSLGSLVGAAIIVIGFYAVQWGKSKEEYEIAKGVEHLDTESLSHDGVPLLADRNT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1561g00001 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 156 - -
Vium1561g00001 358 PANTHER WAT1-RELATED PROTEIN 13 335 IPR030184 GO:0016020|GO:0022857
Vium1561g00001 358 Pfam EamA-like transporter family 15 153 IPR000620 GO:0016020
Vium1561g00001 358 Pfam EamA-like transporter family 184 321 IPR000620 GO:0016020
Vium1561g00001 358 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1561g00001 Vium-Chr1561 13806 16585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1561g00001 8 330 Nodulin-like Gene Family AT5G40240 39.818 7.93e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1561g00001 - - gmx:100792109 469.159