Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium155g00029 ATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAGAAGACCAAAAGAACAGCACCCAAGTCCAACGACATATACCTCAAACTACTTGTCAAGCTGTATCGATTCCTTGTTCGGAGGACTGGCAGCAGTTTCAATGCTGTGATACTCAAGCGCTTGTTCATGAGTAAGGTGAACAAGCCTCCAATTTCGTTGTCGAGGTTGATTAAGTATACAAAAGGGAAGGAAGATAAAATTGCTGTTTTAGTGGGGACAGTAACTGATGATATCAGAGTATATGAAGTTCCACCATTGAAAATTACAGCACTCAGGTTTACAGAGAGAGCACGTGCAAGAATAGAGAAGGCAGGTGGTGAATGCTTGACATTTGATCAACTTGCCCTTAGGGCTCCTTTGGGACAGAATACGGTCCTTTTAAGAGGCCCAAAGAATGCTCGGGAAGCTGTGAAACACTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATACCAAACCCTATGTTCGGTCTGAGGGAAGAAAGTTTGAGAAGGCAAGAGGCAGGAGGAACAGCAGAGGATTTAGAGTTTAA 564 0.4521 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSSFNAVILKRLFMSKVNKPPISLSRLIKYTKGKEDKIAVLVGTVTDDIRVYEVPPLKITALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSEGRKFEKARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium155g00029 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vium155g00029 187 FunFam 60S ribosomal protein L18 1 187 - -
Vium155g00029 187 Gene3D - 1 187 - -
Vium155g00029 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vium155g00029 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium155g00029 Vium-Chr155 195663 197689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium155g00029 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.957 1.57e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium155g00029 K02883 - gmx:100527681 358.992