Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium155g00028 ATGATGATGACAACAATGGAGGGGATGATGGACAAGGCCGTCTTGGATGACGTCATTCGGAGGCTTCTCGAAGGGAAAGGAGGCAAACAGGTTCAGCTCTCTGAGTCCGAGATCCGTCAACTCTGCGTCAATGCCCGACAAATCTTCCTCTCTCAGCCAATTCTTCTCGAGCTCCGTGCTCCCATCCGCATCGGCGGTGATATACATGGTCAGTACCAGGACTTACTGAGGCTTTTTGAATATGGTGGCTTCCCTCCTGCGGCAAACTACTTGTTTCTGGGGGATTATGTGGACAGAGGGAAGCAAAGTTTGGAGACTATTTGTTTGCTTTTGGCCTACAAGATAAGATATCCAGACAAAATTTTTCTCTTGAGGGGAAACCATGAAGAAGCAAAGATTAACCGTATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTACGGTTATGGAAGATATTCACCGACTGCTTTAACTGTTTGCCGGTGGCTGCTCTCATTGATGAGAAAATACTTTGTATGCATGGGGGACTCTCTCCAGAATTAGAAAATTTAGATCTGATAAGAGAGATTCAAAGGCCTACTGAAATTCCAGATAGTGGTCTCCTTTGTGATCTGCTTTGGTCTGATCCTGATGCTAGCATTGAGGGTTGGGCGGATAGTGACCGAGGCGTTTCATGTACCTTTGGACCTGATGTACTTATGGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGGTTGTGGAGGATGGATATGAGTTTTTCGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCGAATTATGGTGGAGAATTTGACAATGCTGGTGCATTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATATTGAAACCCGCTGATAGAGCATCAGGAAGTAGTTCTTCGAAAATGAATTTTAAGAAGCCACCCAAACTGGGAAAGATCTAG 975 0.4349 MMMTTMEGMMDKAVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELRAPIRIGGDIHGQYQDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELENLDLIREIQRPTEIPDSGLLCDLLWSDPDASIEGWADSDRGVSCTFGPDVLMEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADRASGSSSSKMNFKKPPKLGKI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium155g00028 324 FunFam Serine/threonine-protein phosphatase 6 311 - -
Vium155g00028 324 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Vium155g00028 324 Pfam Calcineurin-like phosphoesterase 66 253 IPR004843 GO:0016787
Vium155g00028 324 SMART pp2a_7 33 303 IPR006186 GO:0016787
Vium155g00028 324 CDD MPP_PP1_PPKL 14 301 - -
Vium155g00028 324 Gene3D - 7 310 IPR029052 -
Vium155g00028 324 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Vium155g00028 324 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 18 311 - -
Vium155g00028 324 MobiDBLite consensus disorder prediction 304 324 - -
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Vium155g00028 324 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Vium155g00028 324 SUPERFAMILY Metallo-dependent phosphatases 10 303 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium155g00028 Vium-Chr155 191585 194617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium155g00028 62 247 Calmodulin-binding Proteins AT5G63870 33.484 3.27e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium155g00028 K06269 - gmx:100813792 634.024