Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium155g00023 ATGAGTCGAGGAAGTGCAGCAGGAGCGAAGGGGAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCAAAGCCAGTGGAAGACAAGATCATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTCGGTGGCAAGGCTGGTGCCCTCGGTGACTCTGTTACTGTTACCCGCGAGAAGACCAAGATCATTGTCACCTCTGACAGTAACTTCTCCAAAAGGTATCTGAAGTACTTGACTAAGAAGTACTTGAAGAAACACAATGTGCGAGACTGGCTCAGAGTGATTGCTTCGAACAAGGATAGAAATGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAGGGTGAGGAGGAAGATTAG 375 0.4667 MSRGSAAGAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium155g00023 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vium155g00023 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vium155g00023 124 FunFam 60S ribosomal protein L22-2 5 124 - -
Vium155g00023 124 Gene3D - 5 124 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium155g00023 Vium-Chr155 171772 173180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium155g00023 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.903 2.09e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium155g00023 K02891 - gmx:100499952 215.698