Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium155g00009 ATGAGGTTCATGTTCATCATTACGTTGTTGTTCTTATCATTGCAAAGAGCCAACATTTTGGCTGTGGCTGCCGCGTGGAATGCTGTAGGAAATGAAAATCAAATCAAGAAAACCTCAGGGGATGATGGGAATGAAAACAAGGAAACTCCTAGACTTGAAAACTTCAGAACTTTGCTTGGACTCAAGTCACCCAACAGGTTTCATACAAGAAGGTCTTGCTATAGCGTTTTTTACTCTGACTTTGTCTCCCTCTCGGCTTCTCTGTCATCCAAAACCCAAGCCGAGGCTCCGAATTCGGAGCTGCACGTGCATCCTGGTTCCTATCAATCACTTAGAAGCATGCCGCTTCACAAGATTCAACAACAAGATAGAGGTAGCTCAAATAGAACAACACTAGTGGCTGTTGTAGTATCTGGTGGAGTTGCTACCTTAATCTGTGCACTTGGGTGTGTCTGTGTTTGCAAGAGATTTGGAAATCAGAAATGGAAACCCAATAGGACAATGCCACTCTTTAGCAAACACGGAAGAACAGGAGGTACGTGCCATAATTCATCAAGCAATGCGAGTTTAAACTTTGATCCTGATTTGCTTTCCTTGAAACAAACTTGTGGGACACAAAGCAGCACTTCAAGCCGTAGTTCCCTAAAACGTGCAATTAATGAGGAGAAAGTGTTGAATCAAGAAGAACATGACAATGCCAGCACTGGCAGTTCTTCCACCAAGGAAACTCTATCTGTTCACTATGATTTGGAATATGATGGTGGCAAAGCTTCCTCTGCAGAAAGAACTGTCCCTGAAGAATGTCATTCATCATCAGATTTCGAAAGTTTTCATTCATGTGTTGAAACAGAATCACTGTTTCTTTCTCCTGGAAATTTAATTTCTGCGACAACTCAATTTCCTTGTTCTTCTCACGGTTCAACTTCAAAGGTAGAATCTAACCAATCACCATCCATACCAAAAGACGAAGAGCAAAAGAGGAGTGGAACTTCTCAACCTAGCATTCCTCCCCCGCCAAGTCCACCTCCGTTTTTGAAAGGAAACATGAACAGTGTGATCAAAACCCCACCTTCTCAACAACTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTGTGGGATACGCTTCGAACAAATTCGTTTGAGTTGGATGAGGAAATGATCGAGTCACTCTTTGGCTACAATTTACAGAATTCAACAAAGAACTACGAAACAATAAGTAAAACCCTCTCCCCTAAGGAGCATGTACTCGAGCCAAAACGGCTGCAAAATATAGCAATACTCTCTAAAGCTCTAAATATCACGGCAGAAGAAGTGTGTGAAGCTCTAATACTAGGGAAGGGTTTGTCTCTGCAACAACTGGAGGCACTGGTAAAAATGGTACCAACCAAAGAAGAAGAGGACAAGCTATTGAACTACAAAGGATCTATCAATGAACTTGGGTTCGCTGAAAATTTCGTGAGAGTAATGCTTAGCATACCATTTGCTTTTCAACGAGTGGAAGCCATGCTTTACAGAGAAACTTTCGAAGATGAAGTTACTCACATCAGCAACTCTTTCAAAATGCTAGAGGAAGCATGCAAGGAACTAAGGTCAAGCAAGTTCTTCTTGAAATTGCTGGAAGCAGTGCTGAAAACAGGAAACCGCATGAACGTGGGGACAACAAGGGGAGGTGCTAGAGCTTTCAAACTGGATGCCCTTCTCAAGCTTGCTGATGTTAAAGGAACAGATGGTAAAACCACCCTGCTCCATTTCTTTGTTCAGGAGATAGTTCGCTCAGAAGGGACCAAAGCTTCAAAGAACATCATGGGACAGAAGAGTGAAAAGAGAACGGAGGAAGAGGAGGAAGAAGATTATAGAAGAATGGGACTAAAACTTGTGTCTGGTCTTAGTGCTGAGTTATGCAATGTGAAAAAGACTGCGACAGTTGACTTAAACGTGCTTGCAAGTTCTGTCTCGAACTTATCAAGTGGGTTGGCTAACATACAGAAGCTAGTAAAAGGGTTGTTGAGTGAAGATGAAAAAAACAAGAGCTTTGTGATTTCTATGAAGTTGTTCCTGAATTATGCAGAAAGAAAGGTGCAAGAGTTGCATGGAGATGAAGCTAGAGTGATGGGTCGGGTAAAAGAAGTAACAGAGTATTTTCATGGGGATGTGAGTGACGAAGAGTCGAATCCACTTCAGATATTTGTAATAGTAAGAGACTTTCTGGGTATGGTAAATAATGTGTGCAATGAGCTTAAAAGGTCTATCAAATCCCCTCGCACTATTTGGATTTAG 2307 0.42 MRFMFIITLLFLSLQRANILAVAAAWNAVGNENQIKKTSGDDGNENKETPRLENFRTLLGLKSPNRFHTRRSCYSVFYSDFVSLSASLSSKTQAEAPNSELHVHPGSYQSLRSMPLHKIQQQDRGSSNRTTLVAVVVSGGVATLICALGCVCVCKRFGNQKWKPNRTMPLFSKHGRTGGTCHNSSSNASLNFDPDLLSLKQTCGTQSSTSSRSSLKRAINEEKVLNQEEHDNASTGSSSTKETLSVHYDLEYDGGKASSAERTVPEECHSSSDFESFHSCVETESLFLSPGNLISATTQFPCSSHGSTSKVESNQSPSIPKDEEQKRSGTSQPSIPPPPSPPPFLKGNMNSVIKTPPSQQLPKLKPLHWDKVRATPDRTMVWDTLRTNSFELDEEMIESLFGYNLQNSTKNYETISKTLSPKEHVLEPKRLQNIAILSKALNITAEEVCEALILGKGLSLQQLEALVKMVPTKEEEDKLLNYKGSINELGFAENFVRVMLSIPFAFQRVEAMLYRETFEDEVTHISNSFKMLEEACKELRSSKFFLKLLEAVLKTGNRMNVGTTRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGTKASKNIMGQKSEKRTEEEEEEDYRRMGLKLVSGLSAELCNVKKTATVDLNVLASSVSNLSSGLANIQKLVKGLLSEDEKNKSFVISMKLFLNYAERKVQELHGDEARVMGRVKEVTEYFHGDVSDEESNPLQIFVIVRDFLGMVNNVCNELKRSIKSPRTIWI 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium155g00009 768 SMART it6_source 353 764 IPR015425 -
Vium155g00009 768 MobiDBLite consensus disorder prediction 301 363 - -
Vium155g00009 768 MobiDBLite consensus disorder prediction 222 243 - -
Vium155g00009 768 PANTHER FORMIN-RELATED 14 760 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium155g00009 768 MobiDBLite consensus disorder prediction 301 316 - -
Vium155g00009 768 Pfam Formin Homology 2 Domain 358 749 IPR015425 -
Vium155g00009 768 SUPERFAMILY Formin homology 2 domain (FH2 domain) 336 761 - -
Vium155g00009 768 Gene3D Formin, FH2 domain 348 760 IPR042201 -
Vium155g00009 768 ProSiteProfiles Formin homology-2 (FH2) domain profile. 354 768 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium155g00009 Vium-Chr155 38881 41963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium155g00009 336 763 FH2 protein (formin) Gene Family AT3G05470 67.667 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium155g00009 - - gmx:100805407 1008.82