Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium155g00001 ATGTCAAACTCAAACATCACAAGCTGTGATAGTTGGAGCTTCTCCACAGAGAACACCGGAGAAGATGCAGCAGCAGCAGCAGTTAAGCACCAGCAACTAGAGATGCTTCCCCAAAACCACAGTCCAAATTCAAACACTTCAACTACAACAAATAATAGCAATGCCTCAAACACAAATTCACAACCACCTCTCAAGAAGAAAAGAAACCTACCAGGGAATCCAGACCCGAATGCCGAAGTGGTAGCCCTGTCGCCGAACACCCTGGTGGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCACAATCTACCGTGGAAGCTGAAACTCAGAACCACCACCGAAGTGAAAAAGCGCGTTTACGTTTGTCCCGAACCCTCCTGTGTCCACCACAACCCGGCTCGAGCGCTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAATGTTCTAAGAAATACGCTGTTCATTCTGACTGGAAAGCACATTCCAAAATATGTGGAACCAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGACAGCAACAAATTCAACGAAGCAGGACAACTGCAAAGTATAATGCATGCTTCAAACCTGCAACCACCAATGATCCCAAACCTAGCAGCATCACTACCAATCAATACCAACAATCACAAGCAACCATTACCACTCCCTCACGACCTCATTGCAGGAATTCCAGCAAAACCCTTTAGCAGCAACATGGCAGCATTGCCAAGAAGCCTTTCATCCACCTCTTCTCTCTCTCAACTGTGCTCAAACTCACCACACATCAACATGTTTGAGGAAAAGCCTCAAACAAACATGTCTGCCACGGCACTGCTTCAAAAAGCCGCACAGATGGGCGCAACAGTGAATAGTAACAGCAACAGCATGATGACTGACACGGGCTTTGCTACAAGCATGGCACCACCATCGTATGGGGTCATGAACCACCACATTCACCACGGTCAACAAGACCTGTCTCAGTATAACTTCCATGAAAATGGGACGGTGATGATGGATGGTGTTGGCAATGGCATGGGAGGAATGAGTGGTTTGGATATGTTTAATGCCATATTGGATCAAAGTAAGGCGTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTATAGTGGTGTTTTGCATGCAATGAATAATGGTAGGTCAAGTTCCATTGATGTTGGTGGAGCTAAAGGGAGTGAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGTTGGTGGTGGTGGTGGTGGTGATGGAAACTTCTTTGGTGGTGAACAGTCTGAACTAAAGATTGAATATGGAGAAATGAGTCAAATAAGAATCCAGGCTTTGAACCATTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1518 0.4572 MSNSNITSCDSWSFSTENTGEDAAAAAVKHQQLEMLPQNHSPNSNTSTTTNNSNASNTNSQPPLKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDDSNKFNEAGQLQSIMHASNLQPPMIPNLAASLPINTNNHKQPLPLPHDLIAGIPAKPFSSNMAALPRSLSSTSSLSQLCSNSPHINMFEEKPQTNMSATALLQKAAQMGATVNSNSNSMMTDTGFATSMAPPSYGVMNHHIHHGQQDLSQYNFHENGTVMMDGVGNGMGGMSGLDMFNAILDQSKALSKIIEQNNRSSYSGVLHAMNNGRSSSIDVGGAKGSEDVMTLDLLGIGGGVGGGGGGDGNFFGGEQSELKIEYGEMSQIRIQALNHFQQQTAAYEN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium155g00001 505 FunFam protein indeterminate-domain 12-like 73 141 - -
Vium155g00001 505 MobiDBLite consensus disorder prediction 1 20 - -
Vium155g00001 505 Gene3D Classic Zinc Finger 149 227 - -
Vium155g00001 505 SMART c2h2final6 94 116 IPR013087 -
Vium155g00001 505 SMART c2h2final6 135 165 IPR013087 -
Vium155g00001 505 SMART c2h2final6 170 190 IPR013087 -
Vium155g00001 505 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vium155g00001 505 MobiDBLite consensus disorder prediction 1 78 - -
Vium155g00001 505 Pfam Zinc finger, C2H2 type 94 116 IPR013087 -
Vium155g00001 505 Gene3D Classic Zinc Finger 90 117 - -
Vium155g00001 505 FunFam protein indeterminate-domain 5, chloroplastic-like 148 227 - -
Vium155g00001 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 481 IPR031140 -
Vium155g00001 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Vium155g00001 505 MobiDBLite consensus disorder prediction 34 66 - -
Vium155g00001 505 SUPERFAMILY beta-beta-alpha zinc fingers 93 190 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium155g00001 Vium-Chr155 1395 4757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium155g00001 45 227 IDZ Gene Family AT5G66730 78.191 1.63e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium155g00001 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium155g00001 - - pvu:PHAVU_006G090800g 811.986