LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1559g00002	ATGGTTGAGCAGAAAGTTATCGGTGTTGTTGCTTCATCCTCTTACTCTCCTTCAGTGTTATCTTCTAAAAGATATGATGTGTTTCTAAGCTTTCGAGGTGAGGACACCCGCAAAAAATTCACAAGCCATCTTTATGATGCTTTGAAGCAAAAGAAGGTTGAAACCTTTATCGACAATCGTCTTGAAAAGGGAGAGGAGATCTCAACAACACTAATCCAAGTAATTGAAGATTCTCATATATCTATTGTCATCTTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTATGGAATGTAAGAAAGAAAGAGGACAGATTGTGATACCAGTGTTCTATGACATAGATCCATCCCATGTAAGGAAGCAGACAGGAAGCTATGAGAAATTATTTGTAACACATAAGGGAGAACCCATGTGCAACAAATGGAAAGCTGCTCTCACTGAAGCAGCCAATTTAACTGCATGGGACTCTCGGACATACAGGGTTGAATCTGAACTCCTTAAGGATATTGTTGAAGATGTTTTGCAAAAATTGGCTCCTATATACCCAAACTGGCACAAAGGATTGGTTGGAATTGAGGAAAACTATGAAAAGATTGAGTCATTGCTAAAAGTAGGGTCAAATGAAGTTAAAATCTTGGGAATATGGGGCATGGGTGGAATAGGTAAAACCACCCTTGCTTGTGCTCTATATGACAAACTATCTCACGAGTTTGAAGGTCACTGCTTCCTTGAAAATGTAAGGGAAGAATCAGACAAGCATGGAGTCAAAGCCTTACGTAATAAGCTTTTTTCTGAGTTGTTAGGGAATAAAAATCATTGTTTTGATGTAGCCTTTTCAGTAACCAAGTTTGTTTTGAGTAGGCTAGGACGCAAAAAAGTTTTCATAGTCTTGGATGATGTGGCTACCTCTGAGCAATTAGAAAATCTAATTGAATATTTTGATTTCATGGGACTCGGAAGTAGAGTCGTTGTTACAAGTAGAAACAAGCAAATATTTAGCCAAGTTGATAAAATATATGAAGTCAAGGAATTGAGCTTTCATCACTCCCTTCAACTTTTCAGTTTGACTGTTTTTAGAGAAAAACAACCTAAATATGGATACGAAGATCTATCAAGAAGTGCAACCTCCTATTGCAAAGGTGTTCCTTTGGCTTTGAAAGTTCTTGGTGCAAGTCTTCGTTCAAGAAGTAAGGGAGCATGGGAATGTGAATTGAGAAAACTCCAAAAGTTTCCAAATATGAAAATTCACACTGTCTTAAAATTAAGTTATGATGACTTAGATCACTCTCAGAAGGACATATTTCTAGACATTGCATGCTTCTTTAGAGGGAACCAGAGAGATCATGTGACAAACATGTTGGAAGCTTTTGATTTTTCTGCAATATCTGGGATAGAAGTGCTTCTGGATAGAGCTCTGATAACAATTTCAGGGGGCAATCGACTAGAAATGCATGACTTGATACAAGAAATGGGTTGGGAAATTGTTCATCAAGAATGTGTCAAAGACCCTGGAAGACGAAGTCGGTTGTGGAAACATGAGGAAGTGCATGAAGTCTTCAAATACAACAAGGGAACTGATATTGTTGAAGGCATAATTTTAGATTTGTCCAAATTAATTGAGGATATCTATTTGAGTTCTGATTTCCTTGCAAAGATGACTAACGTGAGATTTTTCAAAATCCATAGTTGGAGCAAGTTTAACATATTTAATGTGTATCTTCCTAATGGTCTTAATACTGTGTCTCATAAAATGAGGTACCTTCATTGGGATGGATTCTGTCTTGAGTCTTTGCCAGCTAACTTCTCTGCTGAAAAACTTGTGGAGCTTTGCATGCGTTGTAGCAAGCTTAAAAAGCTTTGGGATGGTGTTCAGAACCTTGTGAATTTGAAGACTATTGACCTGTGGGGATCCCGAGACTTGATTGAGATTCCAGACTTATCCTTGGCAGAAAAACTTGAAAATGTTTCTCTTTGCTATTGTGAAAGCTTGCATGAGTGA	2019	0.3789	MVEQKVIGVVASSSYSPSVLSSKRYDVFLSFRGEDTRKKFTSHLYDALKQKKVETFIDNRLEKGEEISTTLIQVIEDSHISIVIFSENYASSKWCLGELSKIMECKKERGQIVIPVFYDIDPSHVRKQTGSYEKLFVTHKGEPMCNKWKAALTEAANLTAWDSRTYRVESELLKDIVEDVLQKLAPIYPNWHKGLVGIEENYEKIESLLKVGSNEVKILGIWGMGGIGKTTLACALYDKLSHEFEGHCFLENVREESDKHGVKALRNKLFSELLGNKNHCFDVAFSVTKFVLSRLGRKKVFIVLDDVATSEQLENLIEYFDFMGLGSRVVVTSRNKQIFSQVDKIYEVKELSFHHSLQLFSLTVFREKQPKYGYEDLSRSATSYCKGVPLALKVLGASLRSRSKGAWECELRKLQKFPNMKIHTVLKLSYDDLDHSQKDIFLDIACFFRGNQRDHVTNMLEAFDFSAISGIEVLLDRALITISGGNRLEMHDLIQEMGWEIVHQECVKDPGRRSRLWKHEEVHEVFKYNKGTDIVEGIILDLSKLIEDIYLSSDFLAKMTNVRFFKIHSWSKFNIFNVYLPNGLNTVSHKMRYLHWDGFCLESLPANFSAEKLVELCMRCSKLKKLWDGVQNLVNLKTIDLWGSRDLIEIPDLSLAEKLENVSLCYCESLHE	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1559g00002	672	ProSiteProfiles	TIR domain profile.	23	184	IPR000157	GO:0007165
	Vium1559g00002	672	FunFam	Disease resistance protein (TIR-NBS-LRR class)	21	186	-	-
	Vium1559g00002	672	SMART	till_3	24	158	IPR000157	GO:0007165
	Vium1559g00002	672	Pfam	Leucine Rich Repeat	612	631	IPR011713	-
	Vium1559g00002	672	SUPERFAMILY	L domain-like	490	670	-	-
	Vium1559g00002	672	Gene3D	-	21	185	IPR035897	-
	Vium1559g00002	672	SUPERFAMILY	"Winged helix" DNA-binding domain	421	526	IPR036390	-
	Vium1559g00002	672	Pfam	TIR domain	25	195	IPR000157	GO:0007165
	Vium1559g00002	672	PRINTS	Disease resistance protein signature	218	233	-	-
	Vium1559g00002	672	PRINTS	Disease resistance protein signature	294	308	-	-
	Vium1559g00002	672	PRINTS	Disease resistance protein signature	631	647	-	-
	Vium1559g00002	672	PRINTS	Disease resistance protein signature	385	399	-	-
	Vium1559g00002	672	Gene3D	-	186	349	IPR027417	-
	Vium1559g00002	672	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	186	444	IPR027417	-
	Vium1559g00002	672	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	159	IPR035897	-
	Vium1559g00002	672	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	25	670	IPR044974	GO:0006952
	Vium1559g00002	672	Gene3D	Ribonuclease Inhibitor	528	672	IPR032675	-
	Vium1559g00002	672	Gene3D	-	350	434	IPR042197	-
	Vium1559g00002	672	Pfam	NB-ARC domain	203	427	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1559g00002	Vium-Chr1559	1300	4104	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1559g00002	9	667	WRKY Transcription Factor Family	AT4G12020	32.537	9.36e-94	316

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1559g00002	-		-	vun:114187776	1276.54