Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1558g00010 ATGGGTGATATTGAGGGATCTCCGGGAAGCTCCATGCATGGAGTGACAGGGAGGGAACAAACCTTCATTGCCTCAGTGGCTTCCCCTATGGTCCCAACTGACACAACGGCAAATTTTGCTTTGCCAGTTGATTCTGAGCATAAAGCCAAGGTTTTTAAACTGTTTTCCCTGGCCAATCCCCATATGAGAACCTTCCACCTCTCTTGGATATCCTTCTTCACATGCTTTGTCTCAACCTTTGCAGCAGCCCCTCTTGTCCCCATCATTCGAGACAACCTCAACCTCACCAAGAGTGACATTGGGAATGCCGGGGTTGCTTCTGTCTCGGGCAGCATCTTCTCCAGGCTCACAATGGGTGCAGTTTGTGACCTCTTGGGCCCTCGTTATGGCTGTGCCTTCCTCATCATGCTTTCTGCCCCAACTGTCTTCTGCATGTCGTTTGTGGATGACGCTGCAGGATATATAGCAGTGAGGTTCATGATTGGGTTCTCCTTGGCCACTTTTGTGTCATGTCAGTACTGGATGAGTACCATGTTCAACAGTAAGATTATTGGGCTTGTGAATGGGACTGCTGCAGGGTGGGGAAACATGGGTGGCGGAGCCACTCAGCTCATAATGCCCTTGGTCTACGAATTGATCAGAAGAGCTGGAGCTTCTCCCTTCACTGCCTGGAGAATTGCCTTCTTCGTTCCAGGTTGGTTGCATGTCATCATGGGGATCTTGGTCCTAACCCTAGGCCAAGATTTGCCTGATGGCAACCTTGGTTCCTTGCAGAAGAAGGGTAATGTTGCCAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATTTTTACCCTCCTCTATGGGTACTCTATGGGAGTTGAATTAACCACTGATAATGTTATTGCTGAGTATTTCTATGACAGGTTTAATCTGAAGCTACACACTGCTGGAATCATCGCTGCTTCATTTGGAATGGCAAATCTCCTGGCTCGTCCCTTTGGTGGATACACTTCTGATGTTGCAGCCAGGTTGTTCGGCATGAGGGGCAGGCTTTGGAACCTGTGGATCCTCCAAACCTTAGGAGGTGTTTTCTGCATATGGCTTGGTCGTGCCAACTCACTTCCCATTGCAGTCTTGGCTATGATGCTCTTCTCTATTGGCGCTCAAGCTGCATGTGGTGCCACTTTTGGCATCATTCCTTTCATCTCAAGGCGTTCTCTGGGGATCATATCCGGTCTAACTGGTGCAGGTGGCAACTTTGGCTCTGGTTTGACCCAGTTGATCTTCTTTTCAACCTCAAGGTTTTCTACATCCACTGGTCTCTCCTTGATGGGTGTCATGATTGTGTGTTGCACTCTTCCTGTGACTCTTGTTCACTTCCCCCAGTGGGGTGGCATGTTCCTCCCTCCTTCAAAAGACATCAATAAGTCCACTGAAGAATATTATTACACTTCTGAATGGAATGAGGAAGAGAAGCAAAAGGGTTTACATCAGAATAGTCTGAAATTTGCTGAGAATAGCCGTTCAGAAAGAGGTAAGCGTGTGGCCTCGGCCCTCACACCACCAAACACAACTCCAACCCATATCTAG 1593 0.4802 MGDIEGSPGSSMHGVTGREQTFIASVASPMVPTDTTANFALPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVDDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGASPFTAWRIAFFVPGWLHVIMGILVLTLGQDLPDGNLGSLQKKGNVAKDKFSKVLWYAITNYRTWIFTLLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLLARPFGGYTSDVAARLFGMRGRLWNLWILQTLGGVFCIWLGRANSLPIAVLAMMLFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSTSRFSTSTGLSLMGVMIVCCTLPVTLVHFPQWGGMFLPPSKDINKSTEEYYYTSEWNEEEKQKGLHQNSLKFAENSRSERGKRVASALTPPNTTPTHI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1558g00010 530 FunFam Nitrate transporter 2.1 265 466 - -
Vium1558g00010 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vium1558g00010 530 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Vium1558g00010 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Vium1558g00010 530 MobiDBLite consensus disorder prediction 495 513 - -
Vium1558g00010 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 516 IPR044772 GO:0015112
Vium1558g00010 530 MobiDBLite consensus disorder prediction 495 530 - -
Vium1558g00010 530 FunFam High affinity nitrate transporter 57 254 - -
Vium1558g00010 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vium1558g00010 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Vium1558g00010 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1558g00010 Vium-Chr1558 104020 106495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1558g00010 1 530 Inorganic Solute Cotransporters AT1G08090 80.000 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1558g00010 K02575 - gmx:100807710 1043.88