Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1558g00007 ATGAGGGTTCTGGGATGTATTTTGAAGTTGAAGGGTATGTTGGAAAAGCTTCAAAAGAGTGTCTTGTTGCGGAGACATAAATCAAGTTTCTGTGAGGGAGATTATGAAGAATTGGGAGATGACAGAGGGTGTGTTGCTGAAGATGTGAAAGAAGGGCATTTTGTTGTGATTGCAAAGGATAATATTGAGACAAAGAGATTGGTGGTTCCGTTGAGCTGTTTAAAGAACGCAAGATTCTTGAGGCTGTTGGAGGAAGCTGCAGAAGAATATGGGTTTGATCAACATGGTGCACTGACCATACCTTGCAGGCCTAGTGAACTTGAGATGCTATTGGCTCAACAATGGAAAGAAAGAAGACGATTCTGA 366 0.418 MRVLGCILKLKGMLEKLQKSVLLRRHKSSFCEGDYEELGDDRGCVAEDVKEGHFVVIAKDNIETKRLVVPLSCLKNARFLRLLEEAAEEYGFDQHGALTIPCRPSELEMLLAQQWKERRRF 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1558g00007 121 Pfam Auxin responsive protein 32 111 IPR003676 GO:0009733
Vium1558g00007 121 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 29 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1558g00007 Vium-Chr1558 60423 60925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1558g00007 32 111 Calmodulin-binding Proteins AT5G20810 40.000 5.90e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1558g00007 - K14488 vum:124826917 235.728