Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1558g00006 ATGTTGCCATGGTTCTCCTTTGTGAATGTAACCAAATACTCACCCATTACAAACCCTTCTGAGATAGAGTCTCTGTCTGTTACATTCCATGGACATGATCTCATTGTTGATTCTGAACTGGAGCTGAATTATGGAAGGCGTTATGGTTTACTTGGGTTAAATGGTTGTGGAAAATCTACACTCCTTACAGCCATTGGTGAGCGGGAACTTCCAATTCCTGACCATATGGATATCTATCACCTCACGCGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAATTTTGGCGGCACAGGATGATGGAGGTGGTGAGTCCCTGGAACGTGTTTATGAGCGATTGGACGCCTTAGACGCAGCAACTGCAGAAAAACGTGCTGCGGAAATCTTATATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAAAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGAATTGCATTAGCACGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTTTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTATACTGGTAACTATGATCAATATGTTCAGACTCGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTATAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATATATTGCTCGATTTGGTCATGGTTCTGCAAAACTTGCTCGCCAGGCACAGAGTAAGGAGAAAACATTGGCAAAAATGGAACGTGGTGGACTTGCAGAAAAAGTGGTCAGGGACAAGGTTTTGGTTTTCCGTTTTACTGATGTTGGAAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGTCGTTTGGTTACACTCCTGATAACCTCATATACAAGAACATCGACTTTGGGGTTGATTTAGATTCTAGGGTCGCACTGGTTGGACCCAACGGGGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGATTTGATGCCTTCTGATGGCATGGTTAGGCGTCATAATCATCTTCGGATTGCTCAATATCACCAGCATTTGGCTGAAAAGTTAGACTTGGATATGTCTGCTCTACAGTTTATGATCAAAGAATATCCTGGAAACGAGGAAGAGAAGATGAGGGCAGCGATAGGGAAGTTTGGGCTATCAGGTAAAGCCCAGGTGATGCCAATGAAGAACTTGTCCGATGGGCAGAGGAGTCGGGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCACAAATGCTTCTTTTGGATGAACCAACCAATCATTTGGATATTGAGACAATTGATTCTTTGGCTGAGGCATTGAATGAATGGGATGGGGGCTTGGTGCTTGTTAGCCATGATTTCAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTATGTGCTAATCAAAGTGTGACTAGATGGGAGGGTGACATTATGGAATTCAAGGCTCATCTAAAGGCCAAGGCGGGTTTATCTGACTAA 1641 0.4375 MLPWFSFVNVTKYSPITNPSEIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGERELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLKLEKEAEILAAQDDGGGESLERVYERLDALDAATAEKRAAEILYGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDLDMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKAKAGLSD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1558g00006 546 Gene3D - 21 284 IPR027417 -
Vium1558g00006 546 Gene3D - 296 544 IPR027417 -
Vium1558g00006 546 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 20 260 IPR003439 GO:0005524
Vium1558g00006 546 Coils Coil 238 258 - -
Vium1558g00006 546 CDD ABCF_EF-3 331 522 - -
Vium1558g00006 546 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 21 541 - -
Vium1558g00006 546 SMART AAA_5 356 544 IPR003593 GO:0016887
Vium1558g00006 546 SMART AAA_5 44 246 IPR003593 GO:0016887
Vium1558g00006 546 Pfam ABC transporter 38 192 IPR003439 GO:0005524
Vium1558g00006 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 267 IPR027417 -
Vium1558g00006 546 FunFam Abc transporter f family member 1 20 284 - -
Vium1558g00006 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 525 IPR027417 -
Vium1558g00006 546 CDD ABCF_EF-3 21 237 - -
Vium1558g00006 546 Pfam ABC transporter 347 478 IPR003439 GO:0005524
Vium1558g00006 546 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 331 546 IPR003439 GO:0005524
Vium1558g00006 546 Pfam ABC transporter 231 307 IPR032781 -
Vium1558g00006 546 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Vium1558g00006 546 FunFam ATP-binding cassette sub-family F member 3 291 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1558g00006 Vium-Chr1558 55070 58282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1558g00006 331 518 Calmodulin-binding Proteins AT2G36910 25.688 2.68e-10 61.6