Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1558g00003 ATGGTTAACTCTGAAATGAATAGATCCGGGTACGGTGGTGACGGAATATACCGGTCTCTGAGGCCTTCTTTGGTTCTTCCACGGAACACCAACCTTTCACTCGTTTCGTTTCTCTTCCAGAGCGTTTCTTCTTTTCCGTCCAAAACCGCTCTCGTAGATGCTAACTCTTCTCAAACCCTCTCTTTCGCACAGCTCAAAGCCCGAGTAGCAAGGCTCGCCCATGGTTTCCTCAAATTGGGAATAAAGAAAAACGACGTCGTCCTTCTCCTTGCTCCCAACTCTATCCACTACCCCGTCTGCTTCCTCGCGGCCACAGCCATCGGAGCCATTGTCTCCACAGCCAACCCCATTTACACCGTCCACGAACTCTCGAACCAAGTCAAAGATTCCAATCCCAAACTGTTGATCACAGTTCCTGAACTATGGGACAAAGCAAAGAAACTCAACCTCCCTGCCGTCATTCTCAGCACCAACAACAACCATCAGGACCCAACTAAAGACGTGTCACCGAAAATCTGGACTCTCCATGGGCTAATGGAGATGGCAGGGCCGGTGACGGAGCTGCCGGAGAGTGAGATTAAGCAGGGGGACACGGCGGCGCTGCTGTACTCCTCCGGGACCACGGGGCTGAGCAAAGGCGTTGTCCTGACACATGGGAACTTCATCGCGGCCGCTGTGATGATTAGCGTGGACGACGACCTGGCTGGGGAGGTAGACGACGTGTTCCTCTGTGTTTTGCCGATGTTCCACGTGTTTGGGCTGACGGTGGTGACGTACACAGCTCTGCGACGAGGGAGTGCAGTGGTGACTATGGAGAAGTTTGAGTTGGAGGCGTTTTTAAAGGCCATTGAGAAGCACAGAGTGACGAAGTTGTGGTTAGTGCCTCCTATTCTGCTTGCTATGGCGAAACAACAGAGTGTGGTTCGGAACTACAATCTCTCTTCATTGAAGCGTATAGGTTCTGGTGCTGCTCCTCTGGGGAAAGAGTTGATGGAAGAATGTGGCAAGCATTTCCCTCATGTAGTTGTTTGTCAGGGCTACGGCATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGCAGGGATTCGTCATACTGGGTCAACAGGAATGCTGGCTTCGGGAGTGGAAGCTCAAATAGTGAGTGTGGAAAAACAAAAGCCTCTCCCTCCTAAACAGTTGGGGGAAATATGGGTGCGAGGTCCGAACATGATGAAAGGTTATCACAACAATCCACAGGCCACAAGATTGACCATAGATGAAAAGGGCTGGGTGCACACAGGAGATCTTGGATATTTTGATGAAGATGGACACCTTTATGTGGTCGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAACTTGAAGGCCTTCTCATTTCTCATCCTGAAATATTAGACGCTGTTGTTGTACCATATCCCGATGATGAGGCCGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCAGTGACTGAAGAAGAAATTAAGAAGTTCATTGCCGATCAGGTTGCACCTTTCAAAAAATTGAGAAGGGTGTCATTCATCAGTAGTGTGCCAAAGACATCTTCAGGAAAAATTCTTAGAAGAGAGATTGCTGCAAAAGCTCGATCCAAAATTTAG 1656 0.4897 MVNSEMNRSGYGGDGIYRSLRPSLVLPRNTNLSLVSFLFQSVSSFPSKTALVDANSSQTLSFAQLKARVARLAHGFLKLGIKKNDVVLLLAPNSIHYPVCFLAATAIGAIVSTANPIYTVHELSNQVKDSNPKLLITVPELWDKAKKLNLPAVILSTNNNHQDPTKDVSPKIWTLHGLMEMAGPVTELPESEIKQGDTAALLYSSGTTGLSKGVVLTHGNFIAAAVMISVDDDLAGEVDDVFLCVLPMFHVFGLTVVTYTALRRGSAVVTMEKFELEAFLKAIEKHRVTKLWLVPPILLAMAKQQSVVRNYNLSSLKRIGSGAAPLGKELMEECGKHFPHVVVCQGYGMTETCGIVSVENPRAGIRHTGSTGMLASGVEAQIVSVEKQKPLPPKQLGEIWVRGPNMMKGYHNNPQATRLTIDEKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQVAPAELEGLLISHPEILDAVVVPYPDDEAGEVPIAYVVRSPNSSVTEEEIKKFIADQVAPFKKLRRVSFISSVPKTSSGKILRREIAAKARSKI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1558g00003 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 448 - -
Vium1558g00003 551 FunFam 4-coumarate--CoA ligase 2 449 550 - -
Vium1558g00003 551 Pfam AMP-binding enzyme 40 453 IPR000873 -
Vium1558g00003 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 545 - -
Vium1558g00003 551 SUPERFAMILY Acetyl-CoA synthetase-like 27 549 - -
Vium1558g00003 551 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Vium1558g00003 551 Gene3D - 14 448 IPR042099 -
Vium1558g00003 551 CDD 4CL 26 542 - -
Vium1558g00003 551 Gene3D - 449 550 IPR045851 -
Vium1558g00003 551 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1558g00003 Vium-Chr1558 13643 16957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1558g00003 6 551 Monolignol Biosynthesis Gene Families AT4G05160 68.132 0.0 790