Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1557g00011 ATGACAGATCCTCACTCCAATTTATACGCTGGAACCTTCAACTTCATGCCCCTTTATTCTCACCGTTCTTCTTTCACTTCTCAACCAAACCATTTCTCTTCCTATTCATACTCAAACATAACTAACACCACCAACACCTTCTCCAATATTGTTCAATCAGAAACCTCCTCTTCATCTTGTGCAGCTCCTCCTTCTCCTCCTCTCAGAGAGGCCCTTCCTCTCATAAGTCTCATAAAGCACAAGGAGAATGAACCCTCCAACGCTGGCTGCGAAGCTGAAGAGGAAGGGCACAAGAAAGGAGACATGGATGAGACCCTTTTGACTGAAGATGGTGATGATGAAACTGTGGCAGTAGCACTGCACATAGGTCTTCCTAGCGTGGATTCTTCTGATCTTCTGGGATCGGGGAAGATCTCAGCTTGTGCACAAATGGGTGAGAAAGGGGAAGTGAGTGTGGTTTCTGGACACCCTTTGGATAGATTAAACAAGGTTCAGTATTGGATTCCCACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTTTTATGTTCTGTGTGCTCCAAGAGTTTCAACAGATATAATAATCTTCAGGTATGCAATATGCTAATATTTTTTTCCTTGTACTCTTTATATATACATAATTATTAG 648 0.429 MTDPHSNLYAGTFNFMPLYSHRSSFTSQPNHFSSYSYSNITNTTNTFSNIVQSETSSSSCAAPPSPPLREALPLISLIKHKENEPSNAGCEAEEEGHKKGDMDETLLTEDGDDETVAVALHIGLPSVDSSDLLGSGKISACAQMGEKGEVSVVSGHPLDRLNKVQYWIPTPSQILIGPTQFLCSVCSKSFNRYNNLQVCNMLIFFSLYSLYIHNY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1557g00011 215 PANTHER ZINC FINGER PROTEIN WIP2 30 198 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1557g00011 Vium-Chr1557 67979 69018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1557g00011 30 198 C2H2 Transcription Factor Family AT1G51220 39.891 1.07e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1557g00011 None None None