Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1557g00005 ATGGTTGATCAGGTCCAACACCCTTCAATCATGGACAAGGTTGCTGGTCAGCTCCATCTCCGTTCTGGTTTTTCATCTGGTATTAATAGTTACGATGGAGCTTTCCGCCACCCTGCCATGTACCAAAGACCCTCCTTTGGGAACTACTCAAATGCTGCATTGCAGTATCCTGTGATGCCCTCATGCAAAACTACAATGGATTTGTCTGCTGCTGCAACATCAACATCCCCTGTTTTTGCTGCAGCCCCAGCAGAGAAAGGCCATTTTCTTATTGACTTTCTCATGGGAGGGGTTTCGGCAGCTGTCTCAAAAACTGCTGCTGCTCCCATTGAACGTGTTAAGCTTTTGATCCAGAACCAGGATGAGATGCTCAAAACTGGAAGGCTTGCTGAGCCCTACAAGGGTATTGGTGATTGTTTTAAAAGAACAATAGCGGATGAGGGTGCTGCTTCTCTATGGAGAGGAAACACTGCAAATGTCATCCGTTATTTCCCCACCCAGGCTTTGAACTTTGCATTCAAGGACTATTTCAAGAGGCTTTTCAATTTCAAGAAGGACAGAGATGGCTACTGGAAGTGGTTTGCTGGCAACTTGGCCTCTGGAGGTGCTGCTGGTGCATCGTCCCTTTTATTTGTTTACTCCCTTGACTATGCCCGAACCCGTCTTGCCAATGATGCTAAGGCTGCAAAGAAGGGAGGAGAGAGACAGTTCAAGGGTCTTGTTGATGTCTACAGGAAGACATTGGCATCTGATGGTGTTGCTGGTCTCTACCGTGGATTTAACCTCTCATGTGTTGGAATCATTGTGTATCGTGGTCTGTATTTTGGATTGTATGATTCCATCAAGCCAGTTGTCCTCACTGGATCATTGCAGGATAGCTTTTTCGCCAGCTTTGCCCTGGGATGGCTCATCACCAATGGTGCAGGTCTTGCATCATACCCAATTGACACTGTGAGAAGAAGAATGATGATGACCTCTGGTGAAGCAGTGAAGTACAAGAATTCCTTGGATGCATTCCAACAAATCGTCAAGAAAGAGGGTACCAAGTCCTTGTTCAAGGGTGCTGGTGCCAACATCCTCAGAGCTGTTGCAGGTGCTGGTGTGCTTGCCGGGTATGACAAGTTGCAGGTTCTTGTGTTCGGCAAGAAGTATGGTTCTGGTGGTGCCTAA 1170 0.4718 MVDQVQHPSIMDKVAGQLHLRSGFSSGINSYDGAFRHPAMYQRPSFGNYSNAALQYPVMPSCKTTMDLSAAATSTSPVFAAAPAEKGHFLIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLAEPYKGIGDCFKRTIADEGAASLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFKGLVDVYRKTLASDGVAGLYRGFNLSCVGIIVYRGLYFGLYDSIKPVVLTGSLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKNSLDAFQQIVKKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQVLVFGKKYGSGGA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1557g00005 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 284 IPR018108 -
Vium1557g00005 389 SUPERFAMILY Mitochondrial carrier 88 374 IPR023395 -
Vium1557g00005 389 Pfam Mitochondrial carrier protein 88 184 IPR018108 -
Vium1557g00005 389 Pfam Mitochondrial carrier protein 293 380 IPR018108 -
Vium1557g00005 389 Pfam Mitochondrial carrier protein 191 286 IPR018108 -
Vium1557g00005 389 Gene3D Mitochondrial carrier domain 90 385 IPR023395 -
Vium1557g00005 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 87 180 IPR018108 -
Vium1557g00005 389 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 82 388 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1557g00005 389 FunFam ADP,ATP carrier protein, mitochondrial 90 385 - -
Vium1557g00005 389 ProSiteProfiles Solute carrier (Solcar) repeat profile. 292 378 IPR018108 -
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 301 323 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 92 105 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 105 119 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 257 275 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 207 225 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Mitochondrial carrier protein signature 155 175 IPR002067 GO:0055085
Vium1557g00005 389 PRINTS Adenine nucleotide translocator signature 133 154 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1557g00005 389 PRINTS Adenine nucleotide translocator signature 192 205 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1557g00005 389 PRINTS Adenine nucleotide translocator signature 166 178 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1557g00005 389 PRINTS Adenine nucleotide translocator signature 297 313 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1557g00005 389 PRINTS Adenine nucleotide translocator signature 89 101 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1557g00005 Vium-Chr1557 22804 26235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1557g00005 1 389 Antiporters AT5G13490 81.170 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1557g00005 K05863 - gmx:100789942 719.153