Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1557g00004 ATGAATGATGGTAGGCAAATGGAGTTGCAGTATGTAGATACTGGGTTTCCCTATACTGTTTCTGAAAGCTTCATGGATTTCTTCCAATGCCTCACCACGCACTTGCCTGTCAATTACGCTCACGCTGGCTCAGTGCTCGATCAGGAAAGTATCTACTGGTCAATGAACATGAACCCTTACAAGTTTGGATTGTCTGGCCCAGTAACTACAAGCTATTATGGTTCTTACGAGATAAATGATCATTTTCCAAGAATGGAGATGGATAGGAGAGAGTGGGAATACCCTTCAACAATAGTCGTGGATGAACCTACTCCAACTGACTCTCCATCTGGAAGAGATGGAGTCACAAGCATGCAGACCATCCCAGAAGAATGCAGTCCAAATCATCAAGAATCCAGTAGTAGCCAGGTCATGTGGCAAGACAACATTGATCCCGATAATATGACATATGAGGAACTACTGGACCTGGGTGAGGCAGTGGGAACTCATAATCGCGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCAAAGTACAACTTTGGGAGCTTATTCAAAAGAAAAAGTTCTGCTAAAAGGTGTGTGATTTGTCAGATGTCTTATAGAAGAGGTGACCAGCAAATAAAATTACCATGCAACCATGTTTACCACAGTGAATGCATAACAAGATGGCTTAACATCAGCAAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGTGAGGATTAA 732 0.4235 MNDGRQMELQYVDTGFPYTVSESFMDFFQCLTTHLPVNYAHAGSVLDQESIYWSMNMNPYKFGLSGPVTTSYYGSYEINDHFPRMEMDRREWEYPSTIVVDEPTPTDSPSGRDGVTSMQTIPEECSPNHQESSSSQVMWQDNIDPDNMTYEELLDLGEAVGTHNRGLSQELIDTLPTSKYNFGSLFKRKSSAKRCVICQMSYRRGDQQIKLPCNHVYHSECITRWLNISKKCPVCNIEVFGED 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1557g00004 243 SMART ring_2 195 235 IPR001841 -
Vium1557g00004 243 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Vium1557g00004 243 SUPERFAMILY RING/U-box 194 239 - -
Vium1557g00004 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Vium1557g00004 243 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Vium1557g00004 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vium1557g00004 243 SMART ringv_2 194 236 IPR011016 GO:0008270
Vium1557g00004 243 Pfam Ring finger domain 194 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1557g00004 Vium-Chr1557 14082 19089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1557g00004 3 242 C3H Transcription Factor Family AT3G63530 54.545 1.33e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1557g00004 K19045 - gmx:100785290 410.223