Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1557g00003 ATGCAGTTCCCTTCTGGCTTCTCTAATTCTGTTCCAAGGCAAATGGAGTTGCAGTATGTAGATACTGGGTTTCCCTATACTGTTTCTGAAAGCTTCATGGATTTCTTCCAATGCCTCACCACGCACTTGCCTGTCAATTACGCTCACGCTGGCTCAGTGCTCGATCAGGAAAGTATCTACTGGTCAATGAACATGAACCCTTACAAGTTTGGATTGTCTGGCCCAGTAACTACAAGCTATTATGGTTCTTACGAGATAAATGATCATTTTCCAAGAATGGAGATGGATAGGAGAGAGTGGGAATACCCTTCAACAATAGTCGTGGATGAACCTACTCCAACTGACTCTCCATCTGGAAGAGATGGAGTCACAAGCATGCAGACCATCCCAGAAGAATGCAGTCCAAATCATCAAGAATCCAGTAGTAGCCAGGTCATGTGGCAAGACAACATTGATCCCGATAATATGACATATGAGGAACTACTGGACCTGGGTGAGGCAGTGGGAACTCATAATCGCGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCAAAGTACAACTTTGGGAGCTTATTCAAAAGAAAAAGTTCTGCTAAAAGGTGTGTGATTTGTCAGATGTCTTATAGAAGAGGTGACCAGCAAATAAAATTACCATGCAACCATGTTTACCACAGTGAATGCATAACAAGATGGCTTAACATCAGCAAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGTGAGGATTAA 756 0.4259 MQFPSGFSNSVPRQMELQYVDTGFPYTVSESFMDFFQCLTTHLPVNYAHAGSVLDQESIYWSMNMNPYKFGLSGPVTTSYYGSYEINDHFPRMEMDRREWEYPSTIVVDEPTPTDSPSGRDGVTSMQTIPEECSPNHQESSSSQVMWQDNIDPDNMTYEELLDLGEAVGTHNRGLSQELIDTLPTSKYNFGSLFKRKSSAKRCVICQMSYRRGDQQIKLPCNHVYHSECITRWLNISKKCPVCNIEVFGED 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1557g00003 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 250 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vium1557g00003 251 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vium1557g00003 251 SMART ring_2 203 243 IPR001841 -
Vium1557g00003 251 Pfam Ring finger domain 202 244 IPR001841 -
Vium1557g00003 251 FunFam E3 ubiquitin ligase BIG BROTHER 165 248 - -
Vium1557g00003 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 248 IPR013083 -
Vium1557g00003 251 SMART ringv_2 202 244 IPR011016 GO:0008270
Vium1557g00003 251 SUPERFAMILY RING/U-box 202 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1557g00003 Vium-Chr1557 14082 19239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1557g00003 16 250 C3H Transcription Factor Family AT3G63530 54.661 2.07e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1557g00003 K19045 - gmx:100785290 401.364