Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1556g00008 ATGGCTGCTTGTGCTTTGTTCAGTGCTGCCACTAACATTACCGAAGATGGGAATGTTAACAACGCAACTGCAAGTGCTGCTAGTCCTCTCACCAGTGCTTCTAACTCCAGCAACATGAGCAACGACGACCAACACACCCTACATGGCATCGTGCCACAGCCTCATTGTGAGAGGAAAATCGTCAGGAAAAGAATGGCTTCTGAGATGGACCATCTTAACGTTCATCTCACTCCACCACACAACTCTTCTTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCTCCGCCAACGTCAACATGTCATCCTTAGAAAAAGGGTCCACCACCACACCTACGTTAGCCGCAGGTACTTGTAGTAATAATGGCAATAATAATAATAATACTAGTAATAACTATCATTTTAATAATAGCAACCATAATAGTAGAAGTGGTAGTATTTCGTCAAGAGATAACGTTGGCATTCCAAATTACCCCACTGTGGCCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTGCTCACCAACACCATCATTTCCAAGGGCTTGTTGAAAGTCAAAGCCAGGACCAGCAGAACCCCGTGCCTGCAGTGTGTGGATTCTCGGGATTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGAGACAACAACAACATGAACAACACCGCCACCACCAACCTAAGAACCAGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCGGCCGCCACGAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAACTAATTAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACTGAGTCCGCCCCACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCACCTTCTGTGTCCTCAGTGAAGCTCGTGAATAATCGTGTGGATGGCATTGTTCCTAATCTGCACTTCACAGACGGATCAGGTGGTCCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCCAATCACTCACCACCACGATAGCAACGCCAACAACAACAGCAACACCAACAATAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCGCCACCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACAAGAAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAGAAAGACGAGGAGGGTCTGCATCTCCTCACTTTGCTGCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTATCAACACCGTTTGGCACATCAGCACAGCGTGTGGCCGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTTTGCCACACACCCATCAAAGCCACAAGGTGGCATCGGCTTTCCAAGTGTTCAACGGAATCAGTCCTTTCGTGAAGTTCTCACATTTCACAGCAAACCAAGCTATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACTTCCATGGAAGCACTTGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGTCTTCCCTTTGAGTTCTTCCCGGTGGCTGAGAAAGTAGGGAACCTTGACCCTGAGAGGCTCAACGTTAGCAAAACCGAAGCTGTTGCAGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGTGGGTGAAGGGCTGGCACCTAAAGTGGTGA 2064 0.4797 MAACALFSAATNITEDGNVNNATASAASPLTSASNSSNMSNDDQHTLHGIVPQPHCERKIVRKRMASEMDHLNVHLTPPHNSSSTTDYPRFPRRSSANVNMSSLEKGSTTTPTLAAGTCSNNGNNNNNTSNNYHFNNSNHNSRSGSISSRDNVGIPNYPTVAVTTNYSTMLLPSSTTINSSGVAPNYSAHQHHHFQGLVESQSQDQQNPVPAVCGFSGLPLFPSQSQRNRDNNNMNNTATTNLRTSGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLATILEYRLRLLTESAPQNKRGTEGVPLPPSVSSVKLVNNRVDGIVPNLHFTDGSGGPVVVNQHMLSNWGVPPITHHHDSNANNNSNTNNNPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLAATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRWVKGWHLKW 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1556g00008 687 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 413 660 IPR005202 -
Vium1556g00008 687 Pfam GRAS domain family 462 673 IPR005202 -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 378 453 - -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 223 245 - -
Vium1556g00008 687 Coils Coil 431 451 - -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 439 453 - -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 404 420 - -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 384 403 - -
Vium1556g00008 687 ProSiteProfiles GRAS family profile. 452 687 IPR005202 -
Vium1556g00008 687 MobiDBLite consensus disorder prediction 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1556g00008 Vium-Chr1556 25104 28559 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1556g00008 443 678 GRAS Transcription Factor Family AT5G41920 50.410 7.17e-75 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium1556g00008 GRAS 4.1e-71 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1556g00008 - - gmx:100806779 999.193