Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium154g00003 ATGGAGCTTTCTCAGCTTGGTTTCTTAGAAGAATTGGTAGCTCCAAGAAGAGAGACATGGAATGCTTTGTCCAGTGGGTTCTTGGAGCTATTGTCTAATGGTTGGAGTTTTGACACTTTTCTTGATAACCCATCTTTCCCCTCCTCTAACACCCTCTTTGGTGCATTTTCAGCACCATTAGACCGCAGATTTGAATGCCCTTTCACCAATGAACTACCACCATACCCATTTCCCGATGCCTTCACAATGCCATTGCCAGACCTTCAACCTGGCAACGATCATCCCTCACCTCCACTTCCACCCACACTCGAGGATGCAGATATTGCCTTTTATCACAACAACAATAACAACTTTCAAGAAATCAAGACTGTCTGCAAAGTTGAAGAACATGGTGTTGAGAATCCACAACCCACAGAGATTCCACTCTTCAACACAGCCATGTCTGATGATGGAGAGAGAAAACACAAGTCCAAAAAGCTAGAGGGACAGCCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAGCGTCTCAATGACCGTCTTTCCATGCTTAGGTCAATAGTCCCCAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGGGATACTATAGAATACATGAAAGAGCTTTTGGAAAGGATTGGCAAGTTGCAAGAAGAGGAGGTGGAAGAGGGCTCAAGTCAGATTAATCTGTTGGGCATTTCAAGGGACCAACTCAAACCAAATGAAGCAATTGTAAGAAACTCCCCCAAGTTTGATGTTGAAAGGAGAGACCAGGACACTAGGATCAGCATTTGTTGTGCCACAAAGCCTGGATTGCTACTATCAACCGTCAATACATTAGAAGCATTGGGCCTTGAGATTCAGCAATGTGTTGTAAGCAGCTTCAATGACTTTTCAGTGGAAGCATCTTGTTCTGAGGTAGGTGAACAGAGAAATAGCATTAGCCCTGAGGAGATAAAACAATCACTATTCAGAAATGCTGGGTTTGGTGGGAAATGTCTGTAG 1011 0.4402 MELSQLGFLEELVAPRRETWNALSSGFLELLSNGWSFDTFLDNPSFPSSNTLFGAFSAPLDRRFECPFTNELPPYPFPDAFTMPLPDLQPGNDHPSPPLPPTLEDADIAFYHNNNNNFQEIKTVCKVEEHGVENPQPTEIPLFNTAMSDDGERKHKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIEYMKELLERIGKLQEEEVEEGSSQINLLGISRDQLKPNEAIVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIQQCVVSSFNDFSVEASCSEVGEQRNSISPEEIKQSLFRNAGFGGKCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium154g00003 336 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Vium154g00003 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 223 IPR036638 GO:0046983
Vium154g00003 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Vium154g00003 336 SMART finulus 168 217 IPR011598 GO:0046983
Vium154g00003 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 95 331 - -
Vium154g00003 336 MobiDBLite consensus disorder prediction 148 176 - -
Vium154g00003 336 MobiDBLite consensus disorder prediction 135 176 - -
Vium154g00003 336 Gene3D - 148 212 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium154g00003 Vium-Chr154 36204 37780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium154g00003 9 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 45.245 4.89e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium154g00003 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium154g00003 - - gmx:100790319 475.707