Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00042 ATGCATCTCCCCCCACCTTCCCTTTGTATTTCTCTTTCCCTCATTAACTCATTATCCTATTCCTGTTCCTATTATCACTCAGAATTCCCAGAAGAAGCAGATAGAAAGGAACAGAAGCATAAGCATAAGGAAGCAGAAGCAGATACAGCAACAACAGCTATGGCTCGTGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAAGTCACTTACTCCAAACGACGCAATGGCCTTTTCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAACTCCACGAGTACATTAGCCCCTCCACCTCAACAAAACACTTCTTTGATCAATACCAGATGACCCTAGGAGTTGATCTCTGGAACTCTCACTACGAGAATATGCAGGAGAACTTGAAGAAACTCAAAGAGGTCAATAAGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGCCTGATCGATCTGAATATGGAAGATCTCAAGCTCCTGGAGGATGAAATGGACAAGGCCGCCAAGATTGTTCGCGAGCGTAAGTATAAAGTGATAACAAACCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAGAAAGAAGTGCACAACAGACTCTTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGCATTGATAGAGAATGCAGGAGGAGAGTACGAGTCTGTGATCGGGTTCTCAAATTTAGGTCCACGCATGTTTGCCTTGAGCCTACAGCCAAGCCATCCTAGTGCTCATAGCGGACCAACCTCTGATCTCACCACTTACCCCTTACTTTTCTAG 843 0.4531 MHLPPPSLCISLSLINSLSYSCSYYHSEFPEEADRKEQKHKHKEAEADTATTAMARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKHFFDQYQMTLGVDLWNSHYENMQENLKKLKEVNKNLRKEIRQRMGDCLIDLNMEDLKLLEDEMDKAAKIVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLDARAEDPRFALIENAGGEYESVIGFSNLGPRMFALSLQPSHPSAHSGPTSDLTTYPLLF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00042 280 Gene3D - 66 134 IPR036879 GO:0003677|GO:0046983
Vium1544g00042 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 56 215 - -
Vium1544g00042 280 SMART madsneu2 54 113 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 110 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 Coils Coil 130 164 - -
Vium1544g00042 280 CDD MADS_MEF2_like 55 133 IPR033896 GO:0000977|GO:0045944
Vium1544g00042 280 SUPERFAMILY SRF-like 56 148 IPR036879 GO:0003677|GO:0046983
Vium1544g00042 280 Coils Coil 204 224 - -
Vium1544g00042 280 ProSitePatterns MADS-box domain signature. 56 110 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 ProSiteProfiles MADS-box domain profile. 54 114 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 PRINTS MADS domain signature 76 91 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 PRINTS MADS domain signature 91 112 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 PRINTS MADS domain signature 56 76 IPR002100 GO:0003677|GO:0046983
Vium1544g00042 280 Pfam K-box region 135 220 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium1544g00042 280 ProSiteProfiles K-box domain profile. 137 227 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00042 Vium-Chr1544 290426 292449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00042 54 279 MADS-box Gene Family AT3G54340 55.172 1.02e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium1544g00042 K-box 1.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00042 K09264 - gmx:547720 418.698