Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00037 ATGAAGATCCAGTGCGATGTCTGTAACGAACACCAGGCTTCTTTATTCTGCATCGCCGACGAAGCCGCCCTCTGCGACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTCGCCTCCAAACACCACCGCTTCTCTCTCACCCACCCCTCTGCTAAGCATTTTCCTCTCTGTGATATTTGCCAGGAGAAAAGAGCTTTTGTGTTTTGTCAGCAAGATAGAGCAATTCTGTGCAAAGAGTGTGACGTGTCCATTCATTCTGTCAACGAACTCACCAAGAACCATAGCAGGTTTCTTCTCACCGGGATCAAGTTTTCTACTTCCGCCATACCTTATTCTTCTTCTTCTTCTTCATCATCATCATCAGCAGCAGCAGCCAAGAAAAACCCTGTTCTCGATACTTCACACCCACCTTCCAATCCTCCTTCAACACCCTCACGGCCTAAGCCTGGAGGAAACTTGCAAACAAATCAAGAACCTGGTTTTACTGGTAGCAGCATATCAGAGTACCTGATAAACACTATCCCAGGCATGAAGTTCGAAGATTTTCTCGATTCCCATTCAACCTTTGATTGCTCTAAGAATGGTGATGAGATGCTGTCGGTGTTTGGTGAGGGAAACATGGTTTCGTTCTCCTCTGGTGGGATCTGGGTTCCTCAAGCGCCACCTTCTGCTGCTGCATACTGGGAACAGATGGGTGAGCAGAATGGGTACAGAGAGGGAAGGAAAGGTAGCGTCAGATCAAGTTTGGGCGATGATAATAATTTCGAAGTTCCTCAGATGAGTCCTCCCAGCAACGTTTCGAAGAAATCCAGGTTTCTTTGGTAG 828 0.4795 MKIQCDVCNEHQASLFCIADEAALCDDCDHRVHHANKLASKHHRFSLTHPSAKHFPLCDICQEKRAFVFCQQDRAILCKECDVSIHSVNELTKNHSRFLLTGIKFSTSAIPYSSSSSSSSSSAAAAKKNPVLDTSHPPSNPPSTPSRPKPGGNLQTNQEPGFTGSSISEYLINTIPGMKFEDFLDSHSTFDCSKNGDEMLSVFGEGNMVSFSSGGIWVPQAPPSAAAYWEQMGEQNGYREGRKGSVRSSLGDDNNFEVPQMSPPSNVSKKSRFLW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00037 275 CDD Bbox1_BBX-like 5 47 - -
Vium1544g00037 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium1544g00037 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium1544g00037 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vium1544g00037 275 Gene3D Classic Zinc Finger 1 95 - -
Vium1544g00037 275 MobiDBLite consensus disorder prediction 149 165 - -
Vium1544g00037 275 MobiDBLite consensus disorder prediction 248 269 - -
Vium1544g00037 275 MobiDBLite consensus disorder prediction 238 275 - -
Vium1544g00037 275 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Vium1544g00037 275 CDD Bbox1_BBX-like 57 100 - -
Vium1544g00037 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vium1544g00037 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 264 - -
Vium1544g00037 275 FunFam B-box zinc finger protein 21 1 98 - -
Vium1544g00037 275 MobiDBLite consensus disorder prediction 113 165 - -
Vium1544g00037 275 MobiDBLite consensus disorder prediction 113 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00037 Vium-Chr1544 266538 269042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00037 1 275 C2C2-CO-like Transcription Factor Family AT1G75540 40.774 7.32e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1544g00037 zf-B_box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00037 - - gmx:100785978 415.616