Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00031 ATGGCAACAACGGTTACATTTTTCACCCTCAGACTCGTCGCTTTCTTCGCCTTCTTAACCATAACCATAACCATAACCACTGCGCAGAACACCACTGCTTCGGAGATTCAAGCCTTAACAGCATTCAAGCGCAACCTCCATGACCCTCTGGGTTCCCTCGACGGCTGGGACTCTTCCACGCCCTCTGCACCCTGTGACTGGCGCGGCATTGTCTGTCTCAACAACCGAGTTCACTACCTCCGTCTTCCCCGTCTCCAGCTCGCCGGTGAACTCTCTCCCTCCCTCTCCAATCTCCTCCAACTCCGTAAACTCAGCCTCCACTCCAACAATCTCAACTCCTCCATCCCTCCCTCCCTCTCTCAATGCCTCTTCCTACGCGCAGTTTACCTCCACAACAACCGCCTCTCCGGTCACCTTCCTCGACAGCTTCTCAACCTCACCAACCTACAAATTCTTAACCTTGCCCACAATCTATTCACCGGAGAAATCCCGGACCAGCTTTCCGTCTCCCTACGTTTTTTAGACCTATCTGATAATGCCTTCTCCGGCGATATTCCGGCTAATTTCTCATCAAAGTCTCAGCTTCAACTCATGAATCTCTCTTACAACAGGTTGAGTGGAGGAATTCCTGGTTCACTGGGAAAGTTGCAAAATCTGCAATTTCTTTGGTTAGACTCTAACCATATTCATGGAACTTTTCCGTCTGCCATTGCCAACTGTTCCTCTCTAGTTCACCTTAGTGCAGAGGACAATGTTCTGACCGGACTTCTTCCTCTTACGTTAGTAACCATACCAAAACTTCAGGTACTTTCACTTTCAGGGAATCAACTTTCCGGTTTGGTTCCCAAGTCCTTTTTCTGCAACAGTCACCTACAAAGCTTGAATCTTGGTTTCAATTCCTTTACGGGGTTTTCTGCACCTCAAAGTGAAGAATGCAATAGTATTTTAGAAATTTTGGATGTTCAAGAAAATCACATTGCTCCCACAAGATTTCCCTCGTGGTTGACCCGGACTACAAAATCGTTGAAGGTGCTTCAGCTCTCGGGAAATTTCTTTACTGGTTCTCTCCCTGTTGATATTGGTAACTTTTTAGCTTTGGAAGAGCTTAGAGTCGCAAATAATTTGTTATCTGGTGGTATTCCGCCTAGCATTGTGAATTGTAGGTTGTTAAAGGTTTTTGATCTTGAGGGGAACCGTTTCTCTGGGTTAATTCCTGAATTTCTCGGGGATATGAGAAACCTAAAGGAGTTTTCTCTTGCCGGTAACCTTTTTACCGGTTCGATTCCTTCTAGTTTTGGAACACTTTCTGCACTAGAGACGCTTAATTTGAGTGACAATAAGTTGACGGGTGTGGTGCCTAAGGAGATCATGAAACTGGAGAACGTGACTGAATTGAATCTCAGCAATAACGAGTTTTCGGGTCAACTTTGGTCAAATATTGGGGACATGACGGGTTTGCAAGTTCTTAATTTGAGTCGATGTGGGTTTTCAGGAAGGGTTCCTGCTTCGTTGGGGAATTTAATGAGACTAACGGTTCTGGACTTGAGCAAGCAGAATCTCTCGGGTGAGTTGCCCCTTGAGGTTTTTGGGTTACCTAGTCTGCAAGTTGTGGCACTTCAAGAGAACCGTTTGAGTGGTAAAGTTCCTGAGGGGTTCAGCAGCATAGTTAGTCTGCGATATCTTAATCTCAGCTCTAATGAATATGTTGGTGACATTCCAATGACTTACGGGTTCCTCAGTTCTTTAACTATTCTCTCTCTGTCTCACAATAGTGTTTCTGGTGAGATACCGCCAGAGATTGGTGGTTGTTCGCAACTTGAAGTATTACAGCTGCAGTCAAATTTTCTACAGGGTAACATTCCTGGTGACATCTCTCGGCTATCTCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAGATATCTGAGTGTTCTGCCTTGAGTTCACTCTTGTTGGATGGTAATCACTTCACGGGTCGCATTCCCGGTTCCTTGTCAAAACTGTCTAATTTGACCGTGTTGAACCTTTCTTCAAATCTTTTGAATGGGGAAATTCCCGTTGAACTGTCAAGCATTTCTGGTTTGGAGTATTTAAACGTGTCTAGTAATAATCTTGTGGGTGAGATTCCATACGTGCTTGGTGCCAGATTCAATAACCCTTCCGTGTTTGCAATGAACCAAGGTTTGTGCGGGAAGCCCTTGCAGAGGGAATGTGCAAAGGTGAGAAGGAGAAAGAAGAGAAGGCTAATAATGTTGATAGGCGTGGGAGTGGCTGGCTTGTGCCTTTTGGCGTTGTGTTGTTGTGGGTATGTTTACAGCCTCTTGAGGTGGCGGAAGAAGCTTCGAGAAGGGGTGACGGGTGAGAAGAAACGGAGCCCCTCAACAAGTGCAGGTAGTAGAGGGAGCGGTGAAAACGGAGGACCAAAGCTAGTGATGTTTAACAACAAGATCACGTACGCGGAGACATTGGAAGCAACGAGAAACTTCGATGAAGAGAACGTGTTAAGCAGGGGAAGATATGGCCTCGTGTTCAAAGCCTCCTTCCAAGATGGAATGGTTCTCTCCATTCGTCGCTTCGTTGATGGGTTCTTAGACGAGGCTAACTTCCGCAAGGAAGCAGAATCACTGGGCAAAGTGAAGCATCGAAACTTGACAGTTCTTCGTGGTTACTATGCGGGTCCACCAGATGTGAGACTTCTTGTGTATGACTACATGCCCAATGGAAACCTTGGCACACTGCTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCACTGGGAATTGCTCGAGGGCTAGCTTTCTTGCACTCGGTACCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTTTTTGATGCGGATTTTGAAGCCCATTTGTCTGAATTTGGATTGGAGCGGTTGACAGTGGCAGCAGCGGCAGAAGCATCGTCGTCGTCGACTCCAGTAGGGACATTGGGGTATGTTTCAGCAGAAGCTGTATCGAGTGGGGTGGCGACAAAGGAGAGTGATGTTTATAGCTTTGGGATAGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAGGATGATGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATATCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTAGACCCAGAGTCATCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTGGGTCTCCTCTGCACAGCAACGGATCCTCTTGATCGACCGTCAATGTCGGACGTTGCTTTCATGCTACAAGGTTGCCGGGTCGGACCGGAAATCCCGTCATCGGCCGATCCCACAACACTACCTTCTCCTGCTTGA 3393 0.468 MATTVTFFTLRLVAFFAFLTITITITTAQNTTASEIQALTAFKRNLHDPLGSLDGWDSSTPSAPCDWRGIVCLNNRVHYLRLPRLQLAGELSPSLSNLLQLRKLSLHSNNLNSSIPPSLSQCLFLRAVYLHNNRLSGHLPRQLLNLTNLQILNLAHNLFTGEIPDQLSVSLRFLDLSDNAFSGDIPANFSSKSQLQLMNLSYNRLSGGIPGSLGKLQNLQFLWLDSNHIHGTFPSAIANCSSLVHLSAEDNVLTGLLPLTLVTIPKLQVLSLSGNQLSGLVPKSFFCNSHLQSLNLGFNSFTGFSAPQSEECNSILEILDVQENHIAPTRFPSWLTRTTKSLKVLQLSGNFFTGSLPVDIGNFLALEELRVANNLLSGGIPPSIVNCRLLKVFDLEGNRFSGLIPEFLGDMRNLKEFSLAGNLFTGSIPSSFGTLSALETLNLSDNKLTGVVPKEIMKLENVTELNLSNNEFSGQLWSNIGDMTGLQVLNLSRCGFSGRVPASLGNLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGKVPEGFSSIVSLRYLNLSSNEYVGDIPMTYGFLSSLTILSLSHNSVSGEIPPEIGGCSQLEVLQLQSNFLQGNIPGDISRLSHLKELNLGHNRLKGDIPDEISECSALSSLLLDGNHFTGRIPGSLSKLSNLTVLNLSSNLLNGEIPVELSSISGLEYLNVSSNNLVGEIPYVLGARFNNPSVFAMNQGLCGKPLQRECAKVRRRKKRRLIMLIGVGVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPSTSAGSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASFQDGMVLSIRRFVDGFLDEANFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTVAAAAEASSSSTPVGTLGYVSAEAVSSGVATKESDVYSFGIVLLEILTGKKPVMFTEDDDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00031 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 32 192 - -
Vium1544g00031 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Vium1544g00031 1130 SMART serkin_6 836 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1544g00031 1130 FunFam Piriformospora indica-insensitive protein 2 356 450 - -
Vium1544g00031 1130 SUPERFAMILY L domain-like 32 326 - -
Vium1544g00031 1130 Gene3D Ribonuclease Inhibitor 191 262 IPR032675 -
Vium1544g00031 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 66 167 - -
Vium1544g00031 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 801 911 - -
Vium1544g00031 1130 Gene3D Ribonuclease Inhibitor 460 754 IPR032675 -
Vium1544g00031 1130 Pfam Leucine Rich Repeat 486 507 IPR001611 GO:0005515
Vium1544g00031 1130 MobiDBLite consensus disorder prediction 793 816 - -
Vium1544g00031 1130 Pfam Leucine rich repeat 605 664 IPR001611 GO:0005515
Vium1544g00031 1130 Pfam Leucine rich repeat 265 326 IPR001611 GO:0005515
Vium1544g00031 1130 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Vium1544g00031 1130 Pfam Leucine rich repeat 509 566 IPR001611 GO:0005515
Vium1544g00031 1130 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Vium1544g00031 1130 Gene3D Ribonuclease Inhibitor 263 459 IPR032675 -
Vium1544g00031 1130 SUPERFAMILY Protein kinase-like (PK-like) 815 1119 IPR011009 -
Vium1544g00031 1130 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Vium1544g00031 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Vium1544g00031 1130 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 912 1116 - -
Vium1544g00031 1130 Pfam Protein tyrosine and serine/threonine kinase 839 1055 IPR001245 GO:0004672|GO:0006468
Vium1544g00031 1130 Gene3D Phosphorylase Kinase; domain 1 811 911 - -
Vium1544g00031 1130 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Vium1544g00031 1130 SMART LRR_typ_2 531 554 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 264 287 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 675 699 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 627 651 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 98 122 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 216 240 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 411 434 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 146 170 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 579 603 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 459 483 IPR003591 -
Vium1544g00031 1130 SMART LRR_typ_2 435 458 IPR003591 -
Vium1544g00031 1130 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Vium1544g00031 1130 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Vium1544g00031 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1544g00031 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 210 304 - -
Vium1544g00031 1130 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 456 749 - -
Vium1544g00031 1130 SUPERFAMILY L domain-like 458 718 - -
Vium1544g00031 1130 SUPERFAMILY L domain-like 339 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00031 Vium-Chr1544 216198 219924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00031 1 1130 Receptor kinase-like Gene Family AT1G75640 63.636 0.0 1335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vium1544g00031 PK_Tyr_Ser-Thr 5.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00031 - - gmx:100801571 1822.75