Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00022 ATGGATGATGCTGGGCATCGTGAAAACGGTAGGCACAAAGCAGATCAATATAAATCTGCTCAAGGACAGTGGCTGATGCAACATCAGCCTTCCATGAAGCAGATCATGGCAATTATGGCCGAAAGAGATGCAGCCATCCAAGAAAGAAATCTGGCCATTTCTGAGAAGAAGGCAGCATATGCTGAGCGTGACATGGCATTTCTGCAGCGGGATGCTGCAATTGCAGAACGAAATAATGCAATTTTGGAACGAGACAATGCAATTGCAACTCTTCAGTATCGAGAAACCTCGATAGGTAGTGGCAGTATGTCATCATGTCCTCCGGGATGCCAAATTTCACGTGGTGTCAAGCATATACATCATCCCCAGCAACAGGTACACCATATACCTAACATGGGTGATCCTTCTTACAGCACACGGGAAATGCACACAACCGATGCCCTCCCTGCAGCTCCCATCACTTCTGAGGCTGGGAAATCAAGGCGGGCCAAGCGGCCCAAGGAACCAAAGTCAACTTCACCTAATAAGAAGACTCCAAAAGCAGCAAAAAAAGTCAAAAAGGAGAGTGAAGACTTGAATAAGGTTATGTTTGGCAAAGCACATGAGTGGAAAAATGGTCAGGAAATGGTCAACGGAGGCGATGATCTTAACAAGCAGTTAGTAGTGTCTAAGGCTGATTGGAAAGGTCAGGACTTGGGATTGAACCAAGTGGCTTATGATGAGTCAACCATGCCAGCGCCTGTATGTTCTTGTACCGGTGTCCTGAAGCAGTGTTACAAATGGGGCAATGGAGGTTGGCAGTCTGCCTGTTGCACAACCACTCTGTCAATGTATCCACTTCCTGCAGTGCCAAACAAGAGGCATGCTCGTGTTGGAGGTCGGAAGATGAGTGGTAGCGCTTTCAACAAGCTGCTCAGTCGCCTTGCCGCAGAAGGTCACGATCTGTCAAACCCTGTTGACCTCAAAGACCATTGGGCCAAACACGGGACGAACCGATACATTACAATAAAATAG 1014 0.4753 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAAYAERDMAFLQRDAAIAERNNAILERDNAIATLQYRETSIGSGSMSSCPPGCQISRGVKHIHHPQQQVHHIPNMGDPSYSTREMHTTDALPAAPITSEAGKSRRAKRPKEPKSTSPNKKTPKAAKKVKKESEDLNKVMFGKAHEWKNGQEMVNGGDDLNKQLVVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLKQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00022 337 MobiDBLite consensus disorder prediction 1 21 - -
Vium1544g00022 337 PANTHER - 1 337 IPR010409 -
Vium1544g00022 337 Coils Coil 58 85 - -
Vium1544g00022 337 MobiDBLite consensus disorder prediction 1 15 - -
Vium1544g00022 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Vium1544g00022 337 MobiDBLite consensus disorder prediction 158 174 - -
Vium1544g00022 337 MobiDBLite consensus disorder prediction 146 189 - -
Vium1544g00022 337 SMART GAGA_bind_2 1 337 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00022 Vium-Chr1544 160741 164657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00022 65 337 BBR or BPC Transcription factor family AT5G42520 66.207 3.41e-124 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium1544g00022 GAGA_bind 1.1e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00022 - - gmx:100783502 623.624