Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00020 ATGGGCAAATCTACCTCCTGCTTCAAGCTAATCACTTGCGGTGGCGATGCGGCCGATAAGGACGACTACCACCAAGTCTCCGAGATCAAGGAGTCTAATGATAAACGTGGTTGGAGTTTTCGCAAGAAATCTGCAAGGCATCGTGTGCTTAGCAATACTGTGATAGCAGAGGCTCCATCTTCGACAAATAAGGAAAGTGCAGAATGTACTAATTTTAATTTTCAACCACTTTCTGAACCTAATGTTGTCGAGAAGGTTTACACAACAAATTGCTCTGATGAGAAGCCCCAGTTATCCTCTTTTGAAAACTCACAAGTAGTGGAAACAAATGTAATTGAAACTGAGAGGAAGGTGGATGTGAATCCACCAGAGTCTGATGTCATCGTCATCCAGGCAGCTATTAGGGGGTTATTGGCTCAGAGGGAACTGCTACAGCGTAAGAAAGTAGTGAAGTTGCAAGCTGCCATTCGTGGGCACTTGGTCCGGAGGCATGCTCTGGGAACCCTGCGTTGTGCTCAATCCATAATCAAAATGCAGGTCCTTGTGCGAACTCGTCGTGCTCAGCAGTCACAACTGGAAAATCATTTAATTCACAAGGATGGCGAAAAGGATTCCTCAGAAATTTTGGGAAATGAAAATCTGATGACCAAATCTAATGTGAATTACACTTCCATTGAGAAGCTGCTTAGCAATAGGTTTGCAAGTCAGCTGATGGAATCAACACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCCGATTCTGCTTGGAAATGGTTGGAAAGGTGGATGTCCATATCATCAAAAGATATTGCAGATTGCAATGAAACTAGTTCTCTAACAGAACACTCAAAGGAAAGCAAGGATAGCGCTCCTGTGTTTCAATTTGAAACGGGTATTCCATCTGAACCCTTTCCCCCAGCCACTGACTCAATACCCACTGTTGAGGATTCACCTCTGCCATCTGAGGATGAAGAAAAGTCAATTACTTATGACGCTAATAACTTTGAGTTCCAAGCAAGCTGCTCCGCACCATCTATTGTAAAAGATGACTTGGAACAGGTTCCTGCTGAAGAAAATACTGCATATGATGCCAAAGTTACCTTAGCTGATACCAATTCCTTCCAAAATGACAATTCAGCATCAGATGCAAGTGCCCCATCAGAGTTTTACTCTCTTCACAAGGGACCTGAAATTGCCCCATCATCAGAACACAGTTCTGTTCATGGGGAGCCTGAAATTACCCCACCACCAGAGCATACTTCTTTTTATCAGAAGCCTGAAATTGACAGTGAGCAGAACAAACGATCCGTGAAAAGATTTGCTTCAGAGCAACTAGAGTCTGAAGGTAAGAAAACTGTGAATGGATCAAAAAAGGTCAGTAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATAGCAAATTCAGGCAGGACAAACAATTTGTCCTACCAAGATTCAGCAGTTGAATCACAAGGAGACACCTCTTCTGTTGGCAATGACAGTGCATATAAATCGAAAGAGTTTGCATTTGAAAATCCTGCTCTTTATCTTTCTAGGCTTGCTGGTTCTGATTGTGGCACTGAACTCTCCATTTCTTCAACACTTGATTCACCTGACATATCAGAGCCTGGTATAATGGAAAATGAACGAGATGCCAAAGATTTGGTGGAAGGGATTGGTAATCTTGAGAACACAATAAACCGTGATGATGAGGCCAATGTTTCATCTGCCATCCCAGCTTCTAATGTAGCTACTTCTGTTTTGGATCAGTCGGAGGTTGTTGATGACATTAGTGGCAATTTGGGTCCCTCTGTGGTGGCTGTGGACTCTGGAGAGCCTGCTATTAGTAATATTGAGAAAAATGCATCTGATCTGCAGAGAGAACCAGCAGAGGCTGGTCTGCAAGATTTAAGATCATCTCCAGAAGCATCACCTAGAAGCCATTTGACTGTTCCCGAATCACAAGGAACCCCTTCAAGCCAAGTGTCTGTGCAAACTAAAGAGAACAAAGCCAACAAGAATAGATCTGGCAATAAACGTCGGAGCCTACCCTTAAGTAACAAATCTCCTTCTACTCCAAATCAAGATTCGGGATCAAGAGGCAGTAGGGAGCAACTACCTAAAGATCAGCAGAACGGAAAGAGGCGCACTTCCTTTGGCTCAGTAAAGCCTGATCACATTGATCAAGAACCTAGAGATAATAATACTAGCAACAATTCTGTTCCCCATTTCATGCAAGCTACAGAATCTGCTAAGGCCAAGATTAATGCAAATAACTCGCCAAGATCAAGCCCAGATGTGCATGAACGGGACGTTGAAGTTAAGAAGAGGCTTTCCTTACCTGGTGCCGCTGGTAGACAAGGATCTCCACGTATCCAGCGATCAACATCTAAGGCACAGCAGACTGCCAAAGGGAACAATGTAAATCCTCCTCAAGAGAGAAAATGGCTGAGGTGA 2484 0.4336 MGKSTSCFKLITCGGDAADKDDYHQVSEIKESNDKRGWSFRKKSARHRVLSNTVIAEAPSSTNKESAECTNFNFQPLSEPNVVEKVYTTNCSDEKPQLSSFENSQVVETNVIETERKVDVNPPESDVIVIQAAIRGLLAQRELLQRKKVVKLQAAIRGHLVRRHALGTLRCAQSIIKMQVLVRTRRAQQSQLENHLIHKDGEKDSSEILGNENLMTKSNVNYTSIEKLLSNRFASQLMESTPKNKPIHVKCDPSKADSAWKWLERWMSISSKDIADCNETSSLTEHSKESKDSAPVFQFETGIPSEPFPPATDSIPTVEDSPLPSEDEEKSITYDANNFEFQASCSAPSIVKDDLEQVPAEENTAYDAKVTLADTNSFQNDNSASDASAPSEFYSLHKGPEIAPSSEHSSVHGEPEITPPPEHTSFYQKPEIDSEQNKRSVKRFASEQLESEGKKTVNGSKKVSNPAFIAAQSKFEELSSIANSGRTNNLSYQDSAVESQGDTSSVGNDSAYKSKEFAFENPALYLSRLAGSDCGTELSISSTLDSPDISEPGIMENERDAKDLVEGIGNLENTINRDDEANVSSAIPASNVATSVLDQSEVVDDISGNLGPSVVAVDSGEPAISNIEKNASDLQREPAEAGLQDLRSSPEASPRSHLTVPESQGTPSSQVSVQTKENKANKNRSGNKRRSLPLSNKSPSTPNQDSGSRGSREQLPKDQQNGKRRTSFGSVKPDHIDQEPRDNNTSNNSVPHFMQATESAKAKINANNSPRSSPDVHERDVEVKKRLSLPGAAGRQGSPRIQRSTSKAQQTAKGNNVNPPQERKWLR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00020 827 PANTHER IQ-DOMAIN 5-RELATED 1 797 - -
Vium1544g00020 827 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Vium1544g00020 827 MobiDBLite consensus disorder prediction 428 457 - -
Vium1544g00020 827 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Vium1544g00020 827 MobiDBLite consensus disorder prediction 380 463 - -
Vium1544g00020 827 MobiDBLite consensus disorder prediction 305 329 - -
Vium1544g00020 827 Pfam Protein of unknown function (DUF4005) 733 809 IPR025064 -
Vium1544g00020 827 Pfam IQ calmodulin-binding motif 127 143 IPR000048 GO:0005515
Vium1544g00020 827 Pfam IQ calmodulin-binding motif 146 164 IPR000048 GO:0005515
Vium1544g00020 827 MobiDBLite consensus disorder prediction 626 827 - -
Vium1544g00020 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 191 IPR027417 -
Vium1544g00020 827 SMART iq_5 122 144 IPR000048 GO:0005515
Vium1544g00020 827 SMART iq_5 145 166 IPR000048 GO:0005515
Vium1544g00020 827 Gene3D - 125 164 - -
Vium1544g00020 827 MobiDBLite consensus disorder prediction 742 772 - -
Vium1544g00020 827 MobiDBLite consensus disorder prediction 649 680 - -
Vium1544g00020 827 MobiDBLite consensus disorder prediction 687 727 - -
Vium1544g00020 827 MobiDBLite consensus disorder prediction 798 818 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00020 113 827 IQD Protein Family AT1G19870 35.457 1.45e-102 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00020 - - var:108343123 1607.81