Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00017 ATGCGCCGATTGCAAAAATCAAAAAGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTAGGCTATTCTTATCAGAAGAATCCCCTTCGCAGGTTGGATTAAATTCTCAAGATCACCTCCAAGCTAAGGCATCATTGCAGTTCCCTGCAGGTGGACCAGGTTCCGATGACATTCTGCCTCCTGGATTTGAGGGAACTCATACTTCAAGTCAGTTTGAGATTAAGCCATCTCAAATACCAGTTATTAAGTGGATTACTCCTCCAAAGATTGTGCTAAATCTCGAATGGCAAGTAGTGTCTGGGGAAGAAAGCAAAGAGGTAGAGGATCAACGTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGCACATCATCCATTCCTCCAAACCCTTCTGTTTCAGTGGATGTTGAAGATTCAAATTACATGGATGTTCAACCTGTACTGATACCAATAACGGCAATTGAAGATGACGATGCAGCAGCAGATACATTATCGGATTCCTTGGAACCAGTTGATGCTTCACAATCTCTTGAATTACCTCCCGGTATGTTGAAGAATTCAAACTCTGCCACAAGTACGCAATTTGCTCGTGGTCTGACATCTGATGTATCTGCTGCATCTATTGCTTTAACTAACATTGTGAGGAGCAACGAACATGGGAAATTGATTGACCATGAATTACTTAATAATATTCTCAGCAATCCAGAAGTGATTGAGAAATTGGTTAGAGATTATGGACCTACTAATAGTTCGCAATATGTACATAATGTGGGGTCGTCCTGTGCGGTTTTTTCAAATCCTCCTATTCCTGTTAATCAAGGAGAAACCGCTACACCTTCATCGATTGCTTTTTCAGCCACTTCTTCCTATACACCATCTACCGGAGGTCAGGTGGCACCTGTTTCTACCCAATGGCTTCCTAGGCCTGCAACCAGTTCAGCTATTGTTTCTTCTCCTGTTGAGGTTCCTGCTGCGAAAGATGTTAACTACTATAAGAGTTTAATTCAGCAACATGGAGGAGATAAACAAGAAACACTGCCATATTCCAGTAAACGTCAGATTCATCAGCCAGTAACAAGTTATGAGCCAACATACAATCAAAGAGCTAAAGTGTCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACAGTTCTAGAGGATGTCGAAATGGAGCTAACTGTGCCTACCAGCATGACGCGTCATTTCAGCCACGAGGTAATACCGTGGCGGGGATACAAAGTTCAAAGAGAATGAAAATGGATCATGAGATTAGCAGTTAA 1293 0.4184 MRRLQKSKRVSWASDLDLCQVRLFLSEESPSQVGLNSQDHLQAKASLQFPAGGPGSDDILPPGFEGTHTSSQFEIKPSQIPVIKWITPPKIVLNLEWQVVSGEESKEVEDQRQREMRVLEAIYPRTSSIPPNPSVSVDVEDSNYMDVQPVLIPITAIEDDDAAADTLSDSLEPVDASQSLELPPGMLKNSNSATSTQFARGLTSDVSAASIALTNIVRSNEHGKLIDHELLNNILSNPEVIEKLVRDYGPTNSSQYVHNVGSSCAVFSNPPIPVNQGETATPSSIAFSATSSYTPSTGGQVAPVSTQWLPRPATSSAIVSSPVEVPAAKDVNYYKSLIQQHGGDKQETLPYSSKRQIHQPVTSYEPTYNQRAKVSKPKIMKPCIFFNSSRGCRNGANCAYQHDASFQPRGNTVAGIQSSKRMKMDHEISS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00017 430 ProSiteProfiles Zinc finger C3H1-type profile. 377 405 IPR000571 GO:0046872
Vium1544g00017 430 MobiDBLite consensus disorder prediction 48 70 - -
Vium1544g00017 430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 269 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00017 Vium-Chr1544 112277 124644 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1544g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00017 - - gmx:100783321 651.358