Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00014 ATGGCAATCTCAATGTCAGAAGGGGGACTTGCAAAATGTACCAGAATCCGGCACATAGTCAGGCTCCGCCAAATGCTGCGGCGCTGGCGTAGCAAGGCCCGCATGTCGGCCCACCGAGAAGTACCCTCCGATGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGCAGTAACTCCAGGAGATTCGTGGTGCGCGCCACCTACCTGAACCACCCCGTGTTCACGAAGCTACTTGTAGAGGCGGAGGAAGAGTACGGGTTCTCCAACCACGGTCCTCTCACCATTCCCTGCGACGAAACACTCTTCGAACAGCTCCTCCGCTTCATTTCACGCTCCCATTCCCCTCCCTCCAATCGTTTCGACGACTGTCACGTCCCTCTCATAAACAACCTCGACTTCTGCCTCCAATCTCGACCAATACTCCACTGA 426 0.5728 MAISMSEGGLAKCTRIRHIVRLRQMLRRWRSKARMSAHREVPSDVPAGHVAVCVGSNSRRFVVRATYLNHPVFTKLLVEAEEEYGFSNHGPLTIPCDETLFEQLLRFISRSHSPPSNRFDDCHVPLINNLDFCLQSRPILH 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00014 141 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 31 104 IPR003676 GO:0009733
Vium1544g00014 141 Pfam Auxin responsive protein 21 107 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00014 Vium-Chr1544 97825 98576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00014 10 140 Calmodulin-binding Proteins AT4G34750 48.611 3.32e-42 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00014 K14488 - gmx:100794795 212.231