Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00011 ATGGCTTTGAAAAAATCAACTAAACTCCCTCAAGCAGCACTCATCAAGCAAATCCTCAAGAGGTGTTCCAGCTTAGGTAGGAAAGACGAAGAAGGCCTTCGCTTGGACGTCCCCAAGGGTCACTTTGTTGTCTACGTCGGAGAAAACAGAAGCAGATATATAGTCCCTATTTCCTTCCTCAGTCGCCCTGAGTTCCAAACACTTCTACACCAGGCTGAAGAAGAGTTTGGCTTCGATCACGAAAAGGGTCTCACCATTCCATGCCAACAACACGTTTTTGAGTCTCTCACCTCCATGCTCCGATGA 306 0.4706 MALKKSTKLPQAALIKQILKRCSSLGRKDEEGLRLDVPKGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHEKGLTIPCQQHVFESLTSMLR 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00011 101 Pfam Auxin responsive protein 27 100 IPR003676 GO:0009733
Vium1544g00011 101 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 23 99 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00011 Vium-Chr1544 69892 70561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00011 36 96 Calmodulin-binding Proteins AT3G43120 54.098 4.37e-19 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00011 K14488 - gmx:100305700 185.652