Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1544g00003 ATGTTAATGTCGACTTCCGGCCAGGATCATCATCAATCCCACGACCCTTCTCATCCATCTCAACTTAAATTCCACCTGCTGCACTCCCCTTCTCACATTTCTCCCCTTCCCCATTCTCTTTTTCCCAATTTCTTCCCGAGTCAAAGATATGAAAGTAGTCACAGAAGTAATCTCGAAGTGGCTTCTCACACGAGTAAAACAGTTTATCTTCCCCCTCCAGTTCAAACCCAGTCTACCGAAAGAGGAAAGCAAAATGGTAAATCAAAACTTTCTAGAAACACAAAATCTGGGACTCAAAGACCTAGTGCCGATTCCCCTAATTCAACTGCGGTTAACAACTGTCGTTATGACAGTTCCTTAGGACTGTTGACAAAGAAATTTGTGAGCTTGATCCAAGATGCTAGGGATGGCACCCTTGATCTTAACAAAACTGCTGAGATCCTGGAGGTTCAGAAAAGGAGAATCTATGACATTACAAATGTTCTTGAAGGAGTAGGATTGATAGAGAAAACTTCAAAAAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGAACCAAATTAACGGTCTAAAGGCTGAAGTTGAAAGTCTATATGCCAGGGAATGCGAACTTGATGATTGTATAAGGAAAAAACAGGAGCTTCTAAGAAACCTAGAGGAAAGTGAAAGCTCTCAGAAGTACCTTTTTTTGACCAAGGAAGAGATTCTTAGTCTTCCATGCTTCCAGAATCAAGAAATTATAGCAATCAAGGCTCCAAAAGCTAGTTTCATAGAGGTCCCTGATCCTGATGAGGAATCAGTTTTCCGGCAAAGGCAATACAAAATGATTGTTAGAAGCGCCACTGGACCAATATATTTGTACCTCTTGAGCAAGGACGACTGCAAGTATGAAGATGATAGTGTCAAACGGGTGAAATTAATGGATCCATCGTGGAACAGTGAGCAATGCATAAAGAGAGGTGTGGGATTATTAGAAAGCCACGACGATAAACAAAATACTTCTGAAAGTTTCAATTTTCATGAATCACAGGCATCTGGAATTCAAGAAATAACTCCCACTGATTTTGAAATGGAAGATGACTACTGGTTTCAGTCAGATCCTGGAGTAAGGCTAACACAACTGTGGGAAAATAAACCAATTTTGCCTATAGACGAGCTACCAGACTATTAA 1188 0.4082 MLMSTSGQDHHQSHDPSHPSQLKFHLLHSPSHISPLPHSLFPNFFPSQRYESSHRSNLEVASHTSKTVYLPPPVQTQSTERGKQNGKSKLSRNTKSGTQRPSADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDARDGTLDLNKTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPRELENQINGLKAEVESLYARECELDDCIRKKQELLRNLEESESSQKYLFLTKEEILSLPCFQNQEIIAIKAPKASFIEVPDPDEESVFRQRQYKMIVRSATGPIYLYLLSKDDCKYEDDSVKRVKLMDPSWNSEQCIKRGVGLLESHDDKQNTSESFNFHESQASGIQEITPTDFEMEDDYWFQSDPGVRLTQLWENKPILPIDELPDY 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1544g00003 395 PANTHER TRANSCRIPTION FACTOR E2F 66 383 IPR015633 GO:0000978|GO:0006357
Vium1544g00003 395 MobiDBLite consensus disorder prediction 1 22 - -
Vium1544g00003 395 Coils Coil 210 230 - -
Vium1544g00003 395 CDD E2F_DD 191 298 IPR032198 GO:0046983
Vium1544g00003 395 FunFam E2F transcription factor 1 109 182 - -
Vium1544g00003 395 Gene3D - 187 298 - -
Vium1544g00003 395 MobiDBLite consensus disorder prediction 55 111 - -
Vium1544g00003 395 SMART E2F_TDP_2 115 180 IPR003316 GO:0005667|GO:0006355
Vium1544g00003 395 Gene3D - 110 182 IPR036388 -
Vium1544g00003 395 SUPERFAMILY E2F-DP heterodimerization region 192 298 IPR037241 -
Vium1544g00003 395 Pfam E2F/DP family winged-helix DNA-binding domain 117 180 IPR003316 GO:0005667|GO:0006355
Vium1544g00003 395 SUPERFAMILY "Winged helix" DNA-binding domain 115 178 IPR036390 -
Vium1544g00003 395 Pfam E2F transcription factor CC-MB domain 196 295 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1544g00003 Vium-Chr1544 21497 25413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1544g00003 83 383 E2F-DP Transcription Factor Family AT1G47870 50.492 5.10e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium1544g00003 E2F_CC-MB 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1544g00003 K06620 - gmx:100797301 530.02