Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1543g00001 ATGAGATTAATCAGACATCGGCATGTGGTTGAGCATGAGGTAATGGCCACTAAAACCAAAATTTATTAAGTCATGGAGCATGCAAAAGGTGGTGAGCTCTTCAACAAGGTACTCAAAGGAAGGCTCAAGGTGGATGCTGCTAGGAAATATTAGCAACTGATTAGAGTTGTTGACTACTGCCATAGCAAGCGTGTGTTTCGTCGAGACTTAGAGCCTGAATATTCTTTGGATGAAAATGATAATTTGATGGTTTCAGACTTTGGGTTGAGTGCCTTGACTGAATCCAAACGCCAAGATGGATTGCTCCATAAATGTGGTACCTCTGCCTATGTAGCTCCAGACGTGATAAGCAGAAAAGGTTATGATTGGATGAAAGCGGTAATTTGGTCATGTGGGGTAATCTTGTTTGTTCTGTTGGCTGTTCATCTTCCATTCCATGATTCAAATCTGATGGAGACGTACAGGAAAATCAGTAAAGGGGTATTCAAATTTCCTAAAAGTTGCACAGATGTCGGGTTATTATCCAGAATATTGGATCCAAACCCAAAGACCAGGATATCAATTGTCAGAATTATGAAATGTTCTTGGTTTAAAGTGAGGTTGGAGAATCCTGCTATTAATGCAACCGAAAACCAAGAACCAGCTCACCTGAATGCTGATGGAATAATACTTGAAGCGTGCAAGAATGATGGTCCACCTATTGCAGAATCAAACATGAATTGA 723 0.4039 MRLIRHRHVVELXEVMATKTKIYXVMEHAKGGELFNKVLKGRLKVDAARKYFXQLIRVVDYCHSKRVFRRDLEPEYLXLDENDNLMVSDFGLSALTESKRQDGLLHTXCGTSAYVAPDVISRKGYDWMKAVIWSCGVILFVLLAVHLPFHDSNLMETYRKISKGVFKFPKSCTDVAXLLSRILDPNPKTRISIVRIMKCSWFKVRLENPAINATENQEPAHLNADGIILEACKNDGPPIAESNMN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1543g00001 245 Gene3D Transferase(Phosphotransferase) domain 1 1 236 - -
Vium1543g00001 245 SUPERFAMILY Protein kinase-like (PK-like) 2 210 IPR011009 -
Vium1543g00001 245 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 224 - -
Vium1543g00001 245 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1543g00001 245 SMART serkin_6 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1543g00001 245 Pfam Protein kinase domain 2 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1543g00001 245 FunFam Maternal embryonic leucine zipper kinase 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1543g00001 Vium-Chr1543 37854 38826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1543g00001 1 207 CBL-interacting serine-threonine protein kinases AT5G01810 67.308 3.26e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium1543g00001 Pkinase 6.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1543g00001 K07198 - gmx:100811923 347.821