Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15423g00027 ATGTCGTCCGAGCCGCTGATTCCACCGTCGGAAGCATTGTCAACTTCTTATTCCTTCAGGCGATGCGGCGAAACGGTGTGGATTTTCGACGAGTTGCCGAATGCCACCGTCGTTTCCGTGTCGAGGCCAGACACCGGAGACATTAGCTCAATACTCCTTTCTTATACCATTCAGTTGCAGTACAAACAGTTTAATTGGCGTCTAGTGAAGAAGGCGTCACAACTTCTTTATTTACAGTTCTGTCTGCGAAAACGTGCAATAATTGAAGATTTCCATGACAGGCAAGAACAGTTGAAAGAATGGCTCCAAAACTTGGGAATAGCAGATCAAACGGTAATAGAGCATGAAGATGAAGAACCTGATGATGGAGCTGTGCCTTTACTTCATGAAGACAGTGTTAAAAACAGATATGTTCCATCCGTTGCTGCTCTACCAATAATTCGTCCATCACTAGGAGGGCAGCAGTCAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGTTATTTGAACCATTTTTTAGAAAACTTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTATACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGAGTTGGACGTATCATGTTTCCCGTGTAATTGGTTTCGTTGTTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTTGCCCTCTTGGATGATCCCTTCAGCAACAAACCACTCGATATAATTATTTTTGATATCCTCCCTTCCTCTGATGGAGCTGGAGGGACCAAAGCATATTTGGCTGATCCTATAAAAGGACGCAATCCTTTGCGTTATTCATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGTACTCCTAAAGTAAAAGCTTGGGTTGCTGCAATAAATGAATCTAGTCTGAGACCACTTGAAGGTTGGTGTTCCCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGCTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTTGATGGACATGCTGCTTTTGAAGCTATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATCACGGGCTGGTGGCTATGCCTAGAGCTATATCTGAGGCGACCTTTTGATAGTTTTTCTACCTCTCGGTTAGATTCCTTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTACGTGCTTCTCTACAAGGAGGTTTCTTTAGCTTTGAAAATCAACAGCTCGTACAGTATGAGAAGACTGCTAAAAATTCATGAGAATGTGAAGGTATTGCGCTATCCAGATCATTTCGCTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTATTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGGTATGACACACCTGAACATAAAGTGGGTGACTGCCCTTCTGTAATATGGCCTGGAAAGGACTACTACAACCCAAGGGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGAATCGCAAGAAATATCCCCGTATGCCGTGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGACATTTTGTCCAACGTTGGAACCATGCTAAGAGAACCAAAGCTCCAAATGAACATAAAATTCCTCTACTCATGCCTCACCATCACATGGTCCTTCCTCATTACATGGGAAGAAGCAGAGAGATAGACATTGAAGAAAAGAAAGATGAAGACAAAAGGAAAGAAACTGTCCGGCAAAATTCATTTTCTTCAGAGTCTCCAGTGCAAGATATACCACTACTTTTACCGCAAGAAGCTGATGGAATTGTTACTTCAAATGGAGATCATACAAATTTTAGTGAAATTTCTCCATTGATGGAAGACGAAACTCTACTTTCAGACAATCAGACGAAAGGTTGTGAAGATGAAGTTGTTCCTTTACACTTGGGAGCACAATCTTTTGTCGATGTTCTAGATGATTGGTGGGAAGCACCTGAAGGCACCAATGATGACACAACTTTGGAGTATGGACAAGTTGGTCCACGCATCACCTGTCATTGCCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCCGAAGAAAGCATTCACACGGCATATTGTTCCCTTATTGAAAAAGCAAAACATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTATCAGGGGATGACACAATACAGAACCGTATTTTGGAAGCTTTATATAGGCGTATCTTGCAAGCTCACAAAGAACAGAAAGATTTTCGAGTTATAGTAGTGATTCCCCTCTTACCTGGCTTCCAGGGTGGTCTAGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACGATTTCTAGAGAAAAGCACTCGATACTATACAGTCTTGAAACTATACTTGGTCCTAAGAGTCATGATTATATTTCTTTCTATGGTTTACGATCTCATGGTAGACTCTATGAAAATGGTCCTGTGGCTACAAGTCAGGTGTATGTGCACAGTAAATTGATGATAATTGATGATCGTGTATCTTTTATTGGATCATCTAATATAAATGACCGCAGTTTGCTTGGTTTAAGAGACTCTGAGATTGGAGTGCTTATAGAAGATAAAGAATATGTTGAGTCTTTGATGAATGGAAACCCATGGCAGGCTGGAAAATTTTCCTATAGCCTCCGCTGCTCCTTATGGTCTGAGCACCTTGGTCTTCATAGCGGAGAGATCAGTAAAATCAGTGATCCGGTGGTAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCAAAGGAAAATGCTAGTATATACCATGAGGTCTTTGCTTGCATTCCCAACGATGAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCAGTTGAAAGAAAAACTTGGTCATACCACCATAGATATGGGAATAGCCCCTGATAAGTTGGTCTGTCATGAGAATGGAGAAATCAAAACAATAGACCCGATAGATAGGTTGAAGTCTGTGAAGGGACACCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATGGAGAGTGAGTTTTATGTTGCTCCTCAAGTCTATCATTGA 3216 0.4192 MSSEPLIPPSEALSTSYSFRRCGETVWIFDELPNATVVSVSRPDTGDISSILLSYTIQLQYKQFNWRLVKKASQLLYLQFCLRKRAIIEDFHDRQEQLKEWLQNLGIADQTVIEHEDEEPDDGAVPLLHEDSVKNRYVPSVAALPIIRPSLGGQQSIADRAKVAMQGYLNHFLENLDIVNSQEVCRFLEVSKLSFIQEYGPKLKEGYVMVKHLSNISQELDVSCFPCNWFRCCNNSWKKVWAVLKPGFFALLDDPFSNKPLDIIIFDILPSSDGAGGTKAYLADPIKGRNPLRYSFKVTSGNRSILLRTTSTPKVKAWVAAINESSLRPLEGWCSPHRFGSFAPIRGLTEDGSQAQWFVDGHAAFEAIATSIQDAKSEIFITGWWLCLELYLRRPFDSFSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSSYSMRRLLKIHENVKVLRYPDHFAARVYLWSHHEKLVIIDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELNRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHKIPLLMPHHHMVLPHYMGRSREIDIEEKKDEDKRKETVRQNSFSSESPVQDIPLLLPQEADGIVTSNGDHTNFSEISPLMEDETLLSDNQTKGCEDEVVPLHLGAQSFVDVLDDWWEAPEGTNDDTTLEYGQVGPRITCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLSGDDTIQNRILEALYRRILQAHKEQKDFRVIVVIPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILYSLETILGPKSHDYISFYGLRSHGRLYENGPVATSQVYVHSKLMIIDDRVSFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGNPWQAGKFSYSLRCSLWSEHLGLHSGEISKISDPVVDTTYKDLWSATAKENASIYHEVFACIPNDEIHSRAALRQSMVQLKEKLGHTTIDMGIAPDKLVCHENGEIKTIDPIDRLKSVKGHLVSFPLEFMREEDLRPAVMESEFYVAPQVYH 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15423g00027 1071 Gene3D Endonuclease Chain A 349 588 - -
Vium15423g00027 1071 SMART pld_4 867 894 IPR001736 GO:0003824
Vium15423g00027 1071 SMART pld_4 462 489 IPR001736 GO:0003824
Vium15423g00027 1071 MobiDBLite consensus disorder prediction 600 614 - -
Vium15423g00027 1071 FunFam Phospholipase 701 921 - -
Vium15423g00027 1071 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 462 489 IPR001736 GO:0003824
Vium15423g00027 1071 CDD PLDc_vPLD1_2_yPLD_like_1 355 500 - -
Vium15423g00027 1071 Pfam Phospholipase D Active site motif 462 489 IPR001736 GO:0003824
Vium15423g00027 1071 Gene3D Endonuclease Chain A 690 931 - -
Vium15423g00027 1071 PANTHER PHOSPHOLIPASE D 159 1055 IPR015679 -
Vium15423g00027 1071 Gene3D - 200 331 IPR011993 -
Vium15423g00027 1071 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 867 894 IPR001736 GO:0003824
Vium15423g00027 1071 CDD PLDc_vPLD1_2_yPLD_like_2 727 911 - -
Vium15423g00027 1071 SMART PH_update 202 329 IPR001849 -
Vium15423g00027 1071 SUPERFAMILY Phospholipase D/nuclease 316 582 - -
Vium15423g00027 1071 SUPERFAMILY Phospholipase D/nuclease 706 917 - -
Vium15423g00027 1071 Pfam PLD-like domain 740 914 IPR025202 -
Vium15423g00027 1071 MobiDBLite consensus disorder prediction 600 625 - -
Vium15423g00027 1071 ProSiteProfiles PH domain profile. 201 327 IPR001849 -
Vium15423g00027 1071 CDD PH_PLD 179 324 - -
Vium15423g00027 1071 PIRSF PLD_euk 34 1071 IPR016555 GO:0004630|GO:0006654|GO:0048017
Vium15423g00027 1071 SUPERFAMILY PH domain-like 196 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15423g00027 Vium-Chr15423 194572 204739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15423g00027 28 1071 Phospholipase D Gene Family (Wang group) AT3G05630 65.406 0.0 1394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15423g00027 K01115 - gmx:100796914 1956.03