Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15423g00018 ATGGCAACAAAAATGAAGACCTGGACCACATTGTACACCCTTGTTTTCCTCTTCATTCTCTTCGTTTCTTCCTCTCATGTTGCTTTCTCCTTCTCAGATAGCACATGCAACACTACTCCCTACCCTGCATTCTGCAAAACCACTCTACCACCTCAATATTTATCCACACATGACCAATGCCGTTTCCTCCTTCACCAATCCTTATCAACAACAAAAACGCTTGCTGCATTGCTCTCTTCTTATCTCTCAAACAACTACGCCATTCCTAGTTCAACATTACACGCCCTTCAAGATTGCTTCAACCTTTCACAACTCAATATTGATTTCTTCTCCAATGTCCTCCAAGCCATTCAAAGCACCGTCACTGGCTATCAAGTCTACGACTTGCATACCTTGCTCAGTGCCACTTTAACCAATCAACAAACGTGCTTGAATGGTTTTAACGAGGTGACTCCCTTTCCTGTAGTTACTAATGCCTTGTCAAGTCCACTTTCCGATGCGATCAAACTATATAGCATATCTCTGGCCCTTTTCACCCGTGGTTGGGTTAGCGATGCCATGGAAGGATCAGCCACAGTTGAGACGATTGCTAATAGAAAGTTACTCCAAACAGGCGTTGACAATGTGGAGGTGAGGCAAAAGGTGGTGGTGAACCCTGATGGGTCTGGTGATTTCACCACCATAAATGATGCTGTGGCTGCTGCACCTGAAAACAGCGGCACCAACAACGGGTACCATGTAATCTATGTTGTCGCGGGGATTTACAATGAGTACGTGTCTATTCCTAAGAGCAAGCAGAACCTGATGTTGGTTGGAGATGGTATCAACCGCACCGTACTCACCGGCGATCGAAGCGTTGTCGATGGCTGGACCACTTTCCAATCTGCAACTTTTGCTGTTGTTGGAAAAGGGTTTGTTGCCGTGAACATAACATTTCGTAACACTGCTGGGTCCAGCAAGCATCAAGCTGTGGCTGTGAGAAACGGGGCAGACATGTCTACGTTCTATAATTGCAGTTTTGAGGGTTACCAAGACACACTGTACGTACACTCCCTAAGGCAATTCTACAAACGCTGTGACATTTATGGCACAGTGGATTTTATATTCGGCAATGCAGCAACAGTATTCCAGGATTGTAGCATGTATCCAAGACTCCCTATGCAAAACCAGTTCAATGCAATCACCGCACAAGGCCGAACAGATCCAAACCAAAACACTGGAATCTCCATACAGAACTGCTGCATAATAGGAGCCAGAGAATTGGGTGATGCTACTAGCAACTATAATGGGATACAGACATATTTGGGTAGGCCTTGGAAGGAGTATTCTAGGACTGTTTACATAAAATCTTGCATGGATGGCCTAATTGATCCGAAGGGGTGGACAGAATGGTCAGGGGATTTTGCTTTGAGCACACTGTATTATGCAGAGTTTGCAAACTGGGGACCTGGTTCAAACACCAGCAATAGGGTCACATGGGAAGGTTACCATCTCATAGATGAAAACGATGCACTTGACTTCACGGTGAAGAAGTTTATTCAAGGTGATAAATGGCTACCCTCCACAGGAGTACCTTTCAACGCTGGGTTACAGTAA 1596 0.4518 MATKMKTWTTLYTLVFLFILFVSSSHVAFSFSDSTCNTTPYPAFCKTTLPPQYLSTHDQCRFLLHQSLSTTKTLAALLSSYLSNNYAIPSSTLHALQDCFNLSQLNIDFFSNVLQAIQSTVTGYQVYDLHTLLSATLTNQQTCLNGFNEVTPFPVVTNALSSPLSDAIKLYSISLALFTRGWVSDAMEGSATVETIANRKLLQTGVDNVEVRQKVVVNPDGSGDFTTINDAVAAAPENSGTNNGYHVIYVVAGIYNEYVSIPKSKQNLMLVGDGINRTVLTGDRSVVDGWTTFQSATFAVVGKGFVAVNITFRNTAGSSKHQAVAVRNGADMSTFYNCSFEGYQDTLYVHSLRQFYKRCDIYGTVDFIFGNAATVFQDCSMYPRLPMQNQFNAITAQGRTDPNQNTGISIQNCCIIGARELGDATSNYNGIQTYLGRPWKEYSRTVYIKSCMDGLIDPKGWTEWSGDFALSTLYYAEFANWGPGSNTSNRVTWEGYHLIDENDALDFTVKKFIQGDKWLPSTGVPFNAGLQ 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15423g00018 531 CDD PMEI-like_3 34 182 - -
Vium15423g00018 531 PANTHER PECTINESTERASE 22 520 - -
Vium15423g00018 531 SMART PMEI_2 27 177 IPR006501 GO:0004857
Vium15423g00018 531 Pfam Pectinesterase 215 516 IPR000070 GO:0030599|GO:0042545
Vium15423g00018 531 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vium15423g00018 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Vium15423g00018 531 FunFam Pectinesterase 208 530 - -
Vium15423g00018 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Vium15423g00018 531 SUPERFAMILY Pectin lyase-like 215 529 IPR011050 -
Vium15423g00018 531 NCBIfam pectinesterase inhibitor domain 14 178 IPR006501 GO:0004857
Vium15423g00018 531 Gene3D - 208 530 IPR012334 -
Vium15423g00018 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15423g00018 Vium-Chr15423 107330 109736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15423g00018 14 530 Carbohydrate Esterase AT4G02330 50.441 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15423g00018 K01051 - gmx:100810329 872.848