Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15423g00017 ATGAGCGAGGAAGATGGACCAAGGAAGAGGAATATCGCCTTTATTACTGTCTGTACCATCTTCCTTGTGGGTTGTGTCATAGGCATCGCATTTAGCGTTAACGTGGAGACAGAAAGTTCCAACAATGCAGGACGACAGAAGGACCGCGTTATTTCCTCTGTGAAAGCGGTGAAAATCCTTTGTAAACCCACAATGTACCAGAAAGAATGTGAGAAAAGCCTGATGAAAGATGCTGGGAACATCACAGACTCCAGAGAACTCATTAAAATTGCATTCAATGTAACCATGAAGAAAATAGGTAAAGAACTAAAAAAAATAGATAACATGCACAAGAATGGGAGTGACCCCAGAGCCAAGATGGCGCTTGCAACATGCAAGCAACTGCTCGGTCTTTCCACTGGAGAATTCAAAAGGTCAATTGAGAAAATGGGCAAGTTTGATCTCGACAATCTGAACAACATTCTCACTAGTTTGAAAGTTTGGCTTAGCGGTGCAATCACGTACCAAGAGACTTGCCTGGATGGTTTCAAGAACACCACCACCCATGCACGGATTAAGATGAGGAACTTGTTGACCACTTCCATGCACTTGAGCAGCAACGCCCTTGCCATCATCTCAGCACTTGTTAGTACTGTCGAATTGGGTACGGAAATCGGGAGTCGCCAACTTGCTGAGGGTGGCGAACACGTTTTTGGTCACGGTGAGGTTATTCCCTCGTGGGTTGTTGATGATGATAGTGGTGCTGGTGTTCGTAGACTCCTTCATCAAAGTTCTCACAGACTGAAGGCTAATGCGATTGTGGCGAAAGATGGTAGCGAAAAGTTCAAGAGCATCGGCGAGGCATTAAAGATGGTGCCTAAGAAGAACAAGAAGCCATTCGTGATTTACATTAGGGAGGGTGTTTATCGGGAGTACGTTGAAGTCGCTAAAACCATGACTCGGGTCGTGTTTGTCGGTGATGGTCCCAATAGAACACGAATCACAGGCAAGAGAAACTTCGTGGACGGGATGATTACTTACAAAACCGCCTCAGTTGCTATCCATGGAGATTACTTTGTGGCCCTCAATATAGGGTTTGAGAATTCCGCTGGTCCCCAGAAACATGAAGCAGTAGCCCTAAGGGTCCAAGCAGACAGATCCATTTTCTACAGATGCTCAATAGATGGGTACGAGGGCACGTTGCATGTTCATGCCATGCGTCAATTTTATCGGGAATGCACCGTTTCAGGCACGGTGGATTTTGTCTTTGGTGATGCAGTGGCTGTTTTTCAAAAGTGCACTTTCGTGGTGAGAAAGCCATTGAAAAACCAACAATTGATTGTGACTTCTCAAGGTAGAAAGGAGAAGCAGCAACCATCAGGAATAGTGATCCAAGGAAGTTCCATCGTGGCCAAGCGTAAAGTGAAGTCTGATAGGAAGGCTTACCTTGGTCGTCCACTGAAGAATTACTCGAGGACCATCTTCATGAACACTTACATGGAGGACATTATTAAACCTGAGGGGTATATGGCAAAGCAAGGACGACGGGGTCCTTCAGGTATGAACACTTGTTTCTATGGTGAGTACAATAACAGTGGTCCTGGTTCAAACAAATCCAAGCGTGTAAAATGGCGTGGGATCAAGAAACTCAATTCAAAATCTGCCAGGCAATTCACACCACTCAAGTTTTTTCATGGAGATCAATGGGTTAGAATTACTAGGATTCCTTACTACCCTGACATCCTCCCCAAGCGCTAA 1737 0.4519 MSEEDGPRKRNIAFITVCTIFLVGCVIGIAFSVNVETESSNNAGRQKDRVISSVKAVKILCKPTMYQKECEKSLMKDAGNITDSRELIKIAFNVTMKKIGKELKKIDNMHKNGSDPRAKMALATCKQLLGLSTGEFKRSIEKMGKFDLDNLNNILTSLKVWLSGAITYQETCLDGFKNTTTHARIKMRNLLTTSMHLSSNALAIISALVSTVELGTEIGSRQLAEGGEHVFGHGEVIPSWVVDDDSGAGVRRLLHQSSHRLKANAIVAKDGSEKFKSIGEALKMVPKKNKKPFVIYIREGVYREYVEVAKTMTRVVFVGDGPNRTRITGKRNFVDGMITYKTASVAIHGDYFVALNIGFENSAGPQKHEAVALRVQADRSIFYRCSIDGYEGTLHVHAMRQFYRECTVSGTVDFVFGDAVAVFQKCTFVVRKPLKNQQLIVTSQGRKEKQQPSGIVIQGSSIVAKRKVKSDRKAYLGRPLKNYSRTIFMNTYMEDIIKPEGYMAKQGRRGPSGMNTCFYGEYNNSGPGSNKSKRVKWRGIKKLNSKSARQFTPLKFFHGDQWVRITRIPYYPDILPKR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15423g00017 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Vium15423g00017 578 PANTHER PECTINESTERASE 26 564 - -
Vium15423g00017 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 209 IPR035513 -
Vium15423g00017 578 FunFam Pectinesterase 53 209 - -
Vium15423g00017 578 Pfam Plant invertase/pectin methylesterase inhibitor 56 204 IPR006501 GO:0004857
Vium15423g00017 578 NCBIfam pectinesterase inhibitor domain 54 208 IPR006501 GO:0004857
Vium15423g00017 578 FunFam Pectinesterase 258 574 - -
Vium15423g00017 578 SUPERFAMILY Pectin lyase-like 261 572 IPR011050 -
Vium15423g00017 578 Gene3D - 258 574 IPR012334 -
Vium15423g00017 578 SMART PMEI_2 52 204 IPR006501 GO:0004857
Vium15423g00017 578 Pfam Pectinesterase 264 560 IPR000070 GO:0030599|GO:0042545
Vium15423g00017 578 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Vium15423g00017 578 CDD PMEI-like_3 60 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15423g00017 Vium-Chr15423 104816 106977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15423g00017 3 575 Carbohydrate Esterase AT3G05610 44.750 6.79e-180 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15423g00017 K01051 - gmx:100810853 776.933