Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15423g00001 TGGCAGACAATCTTTCTTCCTGTTGTTGGGCTTGTTGACCCTGACAAATTAAAACCCGGTGATCTTGTTGGTGTTAACAAGGATAGTTACTTAATCTTGGATACCCTGCCTTCTGAGTATGATTCTAGAGTTAAGGCAATGGAAGTCGATGAAAAGCCCACAGAAGATTACAATGACATTGGTGGATTAGAAAAGCAGATTCAAGAATTAGTCGAAGCCATTGTTTTGCCCATGACCCACAAGGAGCGGTTTCAAAAGTTAGGAGTTCGTCCTCCCAAGGGAGTGCTGTTATATGGACCTCCAGGGACTGGGAAAACATTGATGGCCCGTGCCTGTGCAGCACAGACAAATGCCACTTTTCTGAAATTGGCAGGTCCTCAACTGGTCCAGATGTTCATAGGAGATGGAGCAAAACTTGTTCGTGATGCCTTTCAACTAGCAAAGGAGAAGTCACCATGCATTATATTTATAGATGAAATTGATGCAATTGGTACAAAGCGTTTTGATAGTGAAGTAAGTGGAGACAGGGAGGTACAACGGACAATGTTAGAATTACTTAATCAGCTTGATGGTTTTAGCAGTGATGACAGGATTAAGGTGATAGCAGCAACAAATCGTGCAGATATTCTTGACCCCGCCCTTATGCGTTCTGGTCGATTGGATCGTAAAATTGAGTTTCCACACCCAAGTGAAGAAGCAAGAGCCCGTATTCTCCAGATCCATTCAAGGAAGATGAATGTTCATCCAGATGTGAACTTTGAAGAACTCGCACGGTCCACGGATGATTTCAATGGAGCACAACTGAAGGCTGTCTGTGTTGAGGCTGGCATGTTGGCTCTACGCCGTGACNATTCCTTTACAGAGGAACAAAAGCACGCCTTCGTCTTCGTTGGAAACACTTTAAGTATCGCAGTTGTCCTTGGTTTTCTCTTTTATCTTTCCCCAAATTGTGAGTGTTAG 960 0.4365 WQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDXSFTEEQKHAFVFVGNTLSIAVVLGFLFYLSPNCEC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15423g00001 319 FunFam 26S protease regulatory subunit 6A 230 295 - -
Vium15423g00001 319 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 9 285 - -
Vium15423g00001 319 Gene3D - 2 46 IPR012340 -
Vium15423g00001 319 SMART AAA_5 91 230 IPR003593 GO:0016887
Vium15423g00001 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 286 IPR027417 -
Vium15423g00001 319 Gene3D - 47 228 IPR027417 -
Vium15423g00001 319 Pfam AAA+ lid domain 250 292 IPR041569 -
Vium15423g00001 319 Pfam Proteasomal ATPase OB C-terminal domain 2 37 IPR032501 -
Vium15423g00001 319 ProSitePatterns AAA-protein family signature. 198 216 IPR003960 GO:0005524|GO:0016887
Vium15423g00001 319 Gene3D - 230 295 - -
Vium15423g00001 319 FunFam 26S protease regulatory subunit 6A 47 228 - -
Vium15423g00001 319 Pfam ATPase family associated with various cellular activities (AAA) 95 227 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15423g00001 Vium-Chr15423 4 1930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15423g00001 51 288 Calmodulin-binding Proteins AT3G56690 40.336 1.11e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15423g00001 K03065 - gmx:100788486 557.37