Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15420g00001 ATGGCTCAACCCAGCAGCAACGGCGATCTGAGTCAGCAGCAGGGGCAGCAGCAGGGGCAGCAGCAGCAGTGGCCGCAGCCGCATCAGTACCAGCACCAATGGATGACCATGCAGTATCCGGCCACCGCAATGGCCATGATGCAGCAGCAGATGATGATGTACCCCCAGCATTATATGCCCTATGTCCACTCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCATCACAAACAGCCCGCCGCATCTCCCGCCGCCTCCTCTGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAAAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTTGAGTTCTATTCACGTGCGACGGCTGAAAAAGTCTTGCAGAACTATAACGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCTGGGGATAGGCGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCGAGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGGGATGAAAATGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGACCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTGGTATTGGCTGGTGGACACTCGGCAAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCGAACAACACTACCATATTTGTTGGTGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCATTGGGAAAAGGGTGTGGATTTGTTCAATTTGCAGACAGAAAGAATGCTGAGGATGCAATTCAGGCATTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGCCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTAA 1278 0.4953 MAQPSSNGDLSQQQGQQQGQQQQWPQPHQYQHQWMTMQYPATAMAMMQQQMMMYPQHYMPYVHSHYPPPPPPPSHHHHHKQPAASPAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPLGKGCGFVQFADRKNAEDAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15420g00001 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Vium15420g00001 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Vium15420g00001 425 SUPERFAMILY RNA-binding domain, RBD 298 403 IPR035979 GO:0003676
Vium15420g00001 425 CDD RRM2_SECp43_like 187 266 - -
Vium15420g00001 425 MobiDBLite consensus disorder prediction 1 27 - -
Vium15420g00001 425 FunFam Polyadenylate-binding protein RBP47B 175 278 - -
Vium15420g00001 425 Gene3D - 288 411 IPR012677 -
Vium15420g00001 425 Gene3D - 175 281 IPR012677 -
Vium15420g00001 425 Gene3D - 93 173 IPR012677 -
Vium15420g00001 425 SUPERFAMILY RNA-binding domain, RBD 185 283 IPR035979 GO:0003676
Vium15420g00001 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 83 383 - -
Vium15420g00001 425 SMART rrm1_1 95 170 IPR000504 GO:0003723
Vium15420g00001 425 SMART rrm1_1 308 375 IPR000504 GO:0003723
Vium15420g00001 425 SMART rrm1_1 189 263 IPR000504 GO:0003723
Vium15420g00001 425 FunFam Polyadenylate-binding protein RBP47 289 405 - -
Vium15420g00001 425 MobiDBLite consensus disorder prediction 65 90 - -
Vium15420g00001 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Vium15420g00001 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Vium15420g00001 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 372 IPR000504 GO:0003723
Vium15420g00001 425 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Vium15420g00001 425 SUPERFAMILY RNA-binding domain, RBD 62 176 IPR035979 GO:0003676
Vium15420g00001 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 379 IPR000504 GO:0003723
Vium15420g00001 425 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15420g00001 Vium-Chr15420 10499 15255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15420g00001 72 386 Eukaryotic Initiation Factors Gene Family AT4G34110 29.193 2.18e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15420g00001 - - gmx:100814564 644.81