Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15419g00006 ATGATGCCAATCCACAGGACAAGTTTTAAGGATGTCTACTTGGTCTACGAACTCATGGATACCGATCTTCACCAAATTATTAAGTCCTCGCAGCCACTTTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTCCTTCGAGGTCTTAAATACCTTCATTCAGCAAATATTCTTCACCGGGATTTGAAGCCTGGGAATCTGCTCATAAATGCCAATTGTGATTTGAAGATATGTGACTTTGGGCTTGCTCGAACTAATGGAGTTGATGGCCAGTTTATGACAGAATATGTTGTCACTCGTTGGTATCGTGCACCGGAGCTCTTGCTATGCTGTGACAACTACGGGACCTCCATTGATGTCTGGTCAGTAGGGTGCATCTTTGCTGAGATTCTTGGTAGAAAGCCAATTTTCCCTGGCACCGAGTGTCTCAACCAGCTGAAACTAATTATAAGTGTTCTTGGAAGCCAGCATGAATCTCATATTGAGTTTATTGATAATGCAAAAGCCAGGAGGTTTATCAAATCACTGCCCTATACTAGGGGGAGACACTTCTCTCAGCTATATCCACAAGCAGATCCATTAGCCATAGATTTGTTGCAAAAGATGCTTGTATTTGATCCAACCAAGAGAATTACTGTCTTAGAAGCTCTCCAACACCCATATATGTCTGGCCTGTATGATCCAAGGTGTAACCCTCCTGCACAGGTTCCCATCAATCTTGACATAGATGAACATTGGGGAGAACAGATGATTAGGGAAATGATGTGGAATGAGATGCAACATTATCACCCTGAAGTTGCTTCTGCCAATGCATAG 816 0.424 MMPIHRTSFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQHESHIEFIDNAKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMSGLYDPRCNPPAQVPINLDIDEHWGEQMIREMMWNEMQHYHPEVASANA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15419g00006 271 Gene3D Transferase(Phosphotransferase) domain 1 19 248 - -
Vium15419g00006 271 Gene3D Phosphorylase Kinase; domain 1 2 258 - -
Vium15419g00006 271 SUPERFAMILY Protein kinase-like (PK-like) 9 228 IPR011009 -
Vium15419g00006 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Vium15419g00006 271 SMART serkin_6 4 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15419g00006 271 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15419g00006 271 FunFam Mitogen-activated protein kinase 19 248 - -
Vium15419g00006 271 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 7 235 - -
Vium15419g00006 271 ProSiteProfiles Protein kinase domain profile. 1 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15419g00006 Vium-Chr15419 41440 43459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15419g00006 1 271 MAP Kinase Gene Family AT2G18170 83.395 1.80e-172 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium15419g00006 Pkinase 1.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15419g00006 K20537 - gmx:100783422 550.436