Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15419g00003 ATGGAAGATCAAAAGCAAAGGACGAAAGTGAAGATGAAGAACAAGAACAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATCAGGATGTGGCTTGGTACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCAGCCCTGTACCACCATTGCTACAAATTCTCCTATTTCTCTAAAACTCAGAAATCTTCTTCATCGTAAAGCCATGTCAAATCAAACTCAAGTTCAAAACCAGCCCTCTGGTGTAAGTCCATCTTTGCAAGGTGCAATTACTCCAAATGGTAGTACCATGAATAACATCATGGTCATGGAAGAAACCTCTGCTTTTAGTGGTGAAGGTGATAAGTCTTTGTTTGTGGTTCAGAACCAGGTCTCTGATAATATGTATGGACTGGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAGCTTGATTTCTCTTCTTGGCCTTTTTCCCAACAAAGGATTAACGAATTACCATTACCAAAAGATGGATTCAGTGTAGAAAGGCAATTACCAGACTCGGTATATGCAACGAATGAGTGTCACCATTTCGAGGATACATATGAATATGATGTCAATTATCCTCTCTCTCACTTTTTCTGCTTCACTTGA 723 0.408 MEDQKQRTKVKMKNKNKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQPCTTIATNSPISLKLRNLLHRKAMSNQTQVQNQPSGVSPSLQGAITPNGSTMNNIMVMEETSAFSGEGDKSLFVVQNQVSDNMYGLDMNMINCVMGITPDASQLDFSSWPFSQQRINELPLPKDGFSVERQLPDSVYATNECHHFEDTYEYDVNYPLSHFFCFT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15419g00003 240 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Vium15419g00003 240 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 114 - -
Vium15419g00003 240 CDD AP2 17 73 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Vium15419g00003 240 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Vium15419g00003 240 FunFam ethylene-responsive transcription factor RAP2-11 16 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15419g00003 Vium-Chr15419 13839 14829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15419g00003 1 96 AP2-EREBP Transcription Factor Family AT5G19790 72.000 8.08e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium15419g00003 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15419g00003 K09286 - gmx:100803832 319.316