Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15417g00002 ATGGGTTTGAAGGAGGTTGTTCTCGTTGTATTGAGGAGCTTGCTCTCCATGTGCTTCAAGTCGTTATATCTTATTTGGACCAAACGATTTCAGGTGCAGGCTGTATTATTACTTCTGGGAGGGCAGGAAACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAGAACAGTCAGGATATTAGGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA 927 0.4401 MGLKEVVLVVLRSLLSMCFKSLYLIWTKRFQVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNDLDTSADIKPSKAEAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFLIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15417g00002 308 ProSiteProfiles CCT domain profile. 77 119 IPR010402 GO:0005515
Vium15417g00002 308 MobiDBLite consensus disorder prediction 203 241 - -
Vium15417g00002 308 SMART GATA_3 140 193 IPR000679 GO:0006355|GO:0043565
Vium15417g00002 308 PANTHER GATA TRANSCRIPTION FACTOR 28 32 287 IPR045280 GO:0006355
Vium15417g00002 308 MobiDBLite consensus disorder prediction 203 243 - -
Vium15417g00002 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 193 - -
Vium15417g00002 308 Pfam GATA zinc finger 146 182 IPR000679 GO:0006355|GO:0043565
Vium15417g00002 308 CDD ZnF_GATA 145 188 IPR000679 GO:0006355|GO:0043565
Vium15417g00002 308 ProSitePatterns GATA-type zinc finger domain. 146 173 IPR000679 GO:0006355|GO:0043565
Vium15417g00002 308 Pfam CCT motif 77 118 IPR010402 GO:0005515
Vium15417g00002 308 ProSiteProfiles GATA-type zinc finger domain profile. 140 197 IPR000679 GO:0006355|GO:0043565
Vium15417g00002 308 Gene3D - 138 197 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15417g00002 Vium-Chr15417 12965 18404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15417g00002 15 189 Tify Gene Family AT1G51600 52.717 6.82e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium15417g00002 CCT 4.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15417g00002 - - gmx:102669848 499.975