Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium15417g00002 | ATGGGTTTGAAGGAGGTTGTTCTCGTTGTATTGAGGAGCTTGCTCTCCATGTGCTTCAAGTCGTTATATCTTATTTGGACCAAACGATTTCAGGTGCAGGCTGTATTATTACTTCTGGGAGGGCAGGAAACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAGAACAGTCAGGATATTAGGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA | 927 | 0.4401 | MGLKEVVLVVLRSLLSMCFKSLYLIWTKRFQVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNDLDTSADIKPSKAEAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFLIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium15417g00002 | 308 | ProSiteProfiles | CCT domain profile. | 77 | 119 | IPR010402 | GO:0005515 | |
Vium15417g00002 | 308 | MobiDBLite | consensus disorder prediction | 203 | 241 | - | - | |
Vium15417g00002 | 308 | SMART | GATA_3 | 140 | 193 | IPR000679 | GO:0006355|GO:0043565 | |
Vium15417g00002 | 308 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 32 | 287 | IPR045280 | GO:0006355 | |
Vium15417g00002 | 308 | MobiDBLite | consensus disorder prediction | 203 | 243 | - | - | |
Vium15417g00002 | 308 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 142 | 193 | - | - | |
Vium15417g00002 | 308 | Pfam | GATA zinc finger | 146 | 182 | IPR000679 | GO:0006355|GO:0043565 | |
Vium15417g00002 | 308 | CDD | ZnF_GATA | 145 | 188 | IPR000679 | GO:0006355|GO:0043565 | |
Vium15417g00002 | 308 | ProSitePatterns | GATA-type zinc finger domain. | 146 | 173 | IPR000679 | GO:0006355|GO:0043565 | |
Vium15417g00002 | 308 | Pfam | CCT motif | 77 | 118 | IPR010402 | GO:0005515 | |
Vium15417g00002 | 308 | ProSiteProfiles | GATA-type zinc finger domain profile. | 140 | 197 | IPR000679 | GO:0006355|GO:0043565 | |
Vium15417g00002 | 308 | Gene3D | - | 138 | 197 | IPR013088 | GO:0006355|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium15417g00002 | Vium-Chr15417 | 12965 | 18404 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium15417g00002 | 15 | 189 | Tify Gene Family | AT1G51600 | 52.717 | 6.82e-53 | 174 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Vium15417g00002 | CCT | 4.5e-14 | CL0281 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium15417g00002 | - | - | gmx:102669848 | 499.975 |