Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15417g00001 ATGGATACTGTGAATAATCGCAGCCAAAACGGGGAAGAACAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGGTGGATGCTTTCCATTACTCCAATGGTTCTGATGGTGGGGAAGAAGCAGCCACTCCATTGGGCCATGCTTCAACTGCTGTGCACACCCGAACCAGTGAACTCACCATTTCCTTTGAGGGCGAAGTTTATGTTTTTCCTGCTGTTACCCCACAAAAGGTGCAGGCTGTATTATTACTTCTGGGAGGGCAGGAAACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAGAACAGTCAGGATATTAGGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA 1062 0.4576 MDTVNNRSQNGEEQPPPPGTALAMVDAFHYSNGSDGGEEAATPLGHASTAVHTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNDLDTSADIKPSKAEAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFLIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15417g00001 353 MobiDBLite consensus disorder prediction 1 15 - -
Vium15417g00001 353 MobiDBLite consensus disorder prediction 1 20 - -
Vium15417g00001 353 Gene3D - 183 242 IPR013088 GO:0006355|GO:0008270
Vium15417g00001 353 ProSiteProfiles GATA-type zinc finger domain profile. 185 242 IPR000679 GO:0006355|GO:0043565
Vium15417g00001 353 PANTHER GATA TRANSCRIPTION FACTOR 28 36 332 IPR045280 GO:0006355
Vium15417g00001 353 SMART GATA_3 185 238 IPR000679 GO:0006355|GO:0043565
Vium15417g00001 353 MobiDBLite consensus disorder prediction 248 288 - -
Vium15417g00001 353 ProSiteProfiles Tify domain profile. 51 86 IPR010399 -
Vium15417g00001 353 MobiDBLite consensus disorder prediction 248 286 - -
Vium15417g00001 353 CDD ZnF_GATA 190 233 IPR000679 GO:0006355|GO:0043565
Vium15417g00001 353 Pfam GATA zinc finger 191 227 IPR000679 GO:0006355|GO:0043565
Vium15417g00001 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 238 - -
Vium15417g00001 353 SMART tify_2 51 86 IPR010399 -
Vium15417g00001 353 Pfam tify domain 55 85 IPR010399 -
Vium15417g00001 353 Pfam CCT motif 122 163 IPR010402 GO:0005515
Vium15417g00001 353 ProSiteProfiles CCT domain profile. 122 164 IPR010402 GO:0005515
Vium15417g00001 353 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15417g00001 Vium-Chr15417 6128 12136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15417g00001 57 234 Tify Gene Family AT1G51600 57.838 4.23e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium15417g00001 CCT 5.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15417g00001 - - gmx:102669848 588.186