Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium15416g00004 ATGGTGTTCGTCTTTCCAACGCTTCTGTACATGAAGCTAAAACCTTTATCGATGCTTGTTGTATTGTTTTGTGCATTTCCACATTATGATGCTGTCAGTTCTTCTGATTCGGAAGCAAATGCTTTGTTGAAGTGGAAAGGCAGCCTTGACAGCCACAGTCAATCTTCTCTCGCTTCATGGAATGGCACTAATCCTTGCATCTGGCGAGGAATAGAATGTGATGATTCCCTTTCTGTTTCTCACATAAATCTTACACGTGTTGGATTAAAAGGTACACTTCAAACTTTTAACTTCTCATTATTTCCAAACATTCTCGTTCTGAATATGAGTTTCAACTCCTTGTCTGGAAGTATTCCTCCACAGATTGAACAGTTGTCCAATCTCAACACGCTTGATTTGTCTAAAAATCATCTCTCCGGTAACATTCCCAAAACCATCTGTAATATTTCCAAACTAAAGTATCTGAATCTTAGTGTCAATAGTCTCTCTGGTTCTATTCCTAATGAAGTGGATCATCTCCAGTCTCTTCTCACATTCAATATATTTACCAACAACCTCTCTGGGTCAATCCCTCCTACCTTAGGAACCTTGATCCTTTTAGAATCCATTCACCTTTTCGAAAATAAACTCTCTGGATCCATTCCTGCCAGTATTGGGAATTTGTCCAGGCTCACCCTGTTATCTTTATCTTCAAATCAACTCACCGGATCCATCCCTCCCCATATAGGAAATTTAACAAACGCCAAGGTCATATGTGTTATTGAGAATGAACTTACTGGCGAGATTCCAATAGAAATGGAGAAGCTTACTGGTCTCGAATGTTTGTCAATTGCTGATAATAATTTTATAGGCCAAATACCTCAGAACGTTTGCCTCGGGGGAAACATGAAATACTTCACAGCTGGTAATAACAATTTCACTGGCCCAATTCCAGAGACTTTGAAGAAATGCTACAGCCTTAAAAGACTCAGGCTTCAGCAAAACCATTTAACTGGGGATATAACAAACTTTTTTTATTTCCTTCCAGACTTGAACTACATTGATCTCAGTCAAAATAATCTTCACGGTAATATTTCACCTACTTGGGGAAAATTTCGCAGCCTCACAAGCTTCATGATTTTCAAAAACAATTTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAACCAAATTACAGCTGCTTGATCTCTCCTCAAACCATCTTACAGGAAACATTCCAGAAGATTTATGCAACTTGACCCTTTTGTTTGATCTTTCAATCAACGACAATAATCTTTCTGGAAATGTTCCCTCCAAAATAGAATCACTGGAGGGACTTAAATTTTTGGAGCTCGGCTCAAATAATTTTACAGGCTTAATCCAGAAAAAACTTGGAAATTTGCACAATTTATTGTCCTTGAATCTGAGCCAGAATAAATTTGAGGGAAATATTCCTTCTGAGCTTGGCAGTTTGAATTTTCTCTCAAGTCTTGATCTCAGTGGAAATTTGATGAGTGGAAGATTACCACCAACGTTTGGTTTAAAAGACTTAGAAACATTGAATCTATCGCACAACAGTCTTTCAGGTGATCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTTTTGATATATCATACAACCAGTTTGAGGGTCCACTTCCTGAAAATCAAGTCTTCCAGAATGTCACCATTGAAGCTCTGAGAAATAATAAAGGCCTGTGTGGCAATGTCGCTGGCTTGGAGCCTTGCCCGACAGTAAGTGGGAAATCTCATAATAATACGACAAGGAAAGTGCTAATAGCAGTTTTATCCGTTACTGTGGCCATTCTAATGCTTGCACTATTTCTTTTTGGTGTCTCCTGTAATTTATGCCGAACTTCAAACAAAGAACAATTGCAGGCTCTAAGTTCACGATCTCCAAGCATGTCTCCAGTATGGAGTTTTGGAGGCAAAATTATGTTTGAGAACATTATTGAAGCCACCGAATATTTTGATGACAAATATCTCATTGGAGTTGGAGGTCAAGGTTGTGTTTACAAAGCAGTATTACCTACAGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCAAATGGAGAAATCCTTTATCAGAAAGCTTTCTTAATTGAGATCCAGGCTTTGACAGAAATCCGACATCGTAACATTGTAAAGTTTCATGGGTTTTGTTCGCATTCACAATACTCATTTTTGGTGTGCGAATTCCTAGAGAGGGGCGATGTGAAGAAGATTTTGAAAGACGATGAACAAGCAACTGTATTTGATTGGAAGAAAAGGGTGGATGCTATTAAAGACGTGGCAAATGCTTTATGCTATATGCACCATGATTGCTTACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTTTGGATTCAGAATATGTATTTCATGTCTCAGACTTTGGAACTGCTAAGCTTCTTGATCATAGTTCAGCCAATTGGACATCATTTGCCGGAACCTTTGGATATGCTGCTCCAGAACTTGCGTACACAATGGAAGTAAACGAGAAATGTGACGTGTATAGTTTTGGGGTCTTGGCATTGGAAATATTATTTGGAAGGCACCCTGGTGATGTTACATCTTTATTGCAATCTTCTTTATCAATTGGTATGATCTCAACACTTGATCATATGGCATTGATGGATAACTTGGATGAACGTCTACCTCATCCAACAAGTTCTACTTTGAAAGAGCTGGTATCAATTCTCAAGATAGCAATTTCTTGCCTCACTGAAACTCCATGA 2760 0.3851 MVFVFPTLLYMKLKPLSMLVVLFCAFPHYDAVSSSDSEANALLKWKGSLDSHSQSSLASWNGTNPCIWRGIECDDSLSVSHINLTRVGLKGTLQTFNFSLFPNILVLNMSFNSLSGSIPPQIEQLSNLNTLDLSKNHLSGNIPKTICNISKLKYLNLSVNSLSGSIPNEVDHLQSLLTFNIFTNNLSGSIPPTLGTLILLESIHLFENKLSGSIPASIGNLSRLTLLSLSSNQLTGSIPPHIGNLTNAKVICVIENELTGEIPIEMEKLTGLECLSIADNNFIGQIPQNVCLGGNMKYFTAGNNNFTGPIPETLKKCYSLKRLRLQQNHLTGDITNFFYFLPDLNYIDLSQNNLHGNISPTWGKFRSLTSFMIFKNNLSGVIPPELGGATKLQLLDLSSNHLTGNIPEDLCNLTLLFDLSINDNNLSGNVPSKIESLEGLKFLELGSNNFTGLIQKKLGNLHNLLSLNLSQNKFEGNIPSELGSLNFLSSLDLSGNLMSGRLPPTFGLKDLETLNLSHNSLSGDLSSLDDMISLTSFDISYNQFEGPLPENQVFQNVTIEALRNNKGLCGNVAGLEPCPTVSGKSHNNTTRKVLIAVLSVTVAILMLALFLFGVSCNLCRTSNKEQLQALSSRSPSMSPVWSFGGKIMFENIIEATEYFDDKYLIGVGGQGCVYKAVLPTGEVVAVKKLHSVSNGEILYQKAFLIEIQALTEIRHRNIVKFHGFCSHSQYSFLVCEFLERGDVKKILKDDEQATVFDWKKRVDAIKDVANALCYMHHDCLPPIVHRDISSKNVLLDSEYVFHVSDFGTAKLLDHSSANWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGRHPGDVTSLLQSSLSIGMISTLDHMALMDNLDERLPHPTSSTLKELVSILKIAISCLTETP 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium15416g00004 919 ProSiteProfiles Leucine-rich repeat profile. 510 532 IPR001611 GO:0005515
Vium15416g00004 919 SUPERFAMILY L domain-like 281 580 - -
Vium15416g00004 919 Pfam Leucine Rich Repeat 391 413 IPR001611 GO:0005515
Vium15416g00004 919 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515
Vium15416g00004 919 Gene3D Ribonuclease Inhibitor 185 292 IPR032675 -
Vium15416g00004 919 SMART LRR_sd22_2 221 247 - -
Vium15416g00004 919 SMART LRR_sd22_2 508 530 - -
Vium15416g00004 919 SMART LRR_sd22_2 125 151 - -
Vium15416g00004 919 SMART LRR_sd22_2 413 439 - -
Vium15416g00004 919 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Vium15416g00004 919 FunFam MDIS1-interacting receptor like kinase 2 isoform A 191 290 - -
Vium15416g00004 919 Pfam Protein kinase domain 661 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15416g00004 919 SMART LRR_typ_2 461 485 IPR003591 -
Vium15416g00004 919 SMART LRR_typ_2 269 293 IPR003591 -
Vium15416g00004 919 SMART LRR_typ_2 390 413 IPR003591 -
Vium15416g00004 919 SMART LRR_typ_2 508 535 IPR003591 -
Vium15416g00004 919 SMART LRR_typ_2 221 245 IPR003591 -
Vium15416g00004 919 SMART LRR_typ_2 125 149 IPR003591 -
Vium15416g00004 919 FunFam MDIS1-interacting receptor like kinase 2 738 919 - -
Vium15416g00004 919 Gene3D Ribonuclease Inhibitor 293 586 IPR032675 -
Vium15416g00004 919 Gene3D Transferase(Phosphotransferase) domain 1 738 919 - -
Vium15416g00004 919 SUPERFAMILY Protein kinase-like (PK-like) 636 875 IPR011009 -
Vium15416g00004 919 FunFam Leucine-rich repeat receptor protein kinase MSP1 622 737 - -
Vium15416g00004 919 Gene3D Ribonuclease Inhibitor 34 184 IPR032675 -
Vium15416g00004 919 Gene3D Phosphorylase Kinase; domain 1 620 737 - -
Vium15416g00004 919 ProSiteProfiles Protein kinase domain profile. 659 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium15416g00004 919 FunFam Nuclear pore complex protein NUP107 35 190 - -
Vium15416g00004 919 PANTHER LEUCINE RICH REPEAT KINASE 2 200 919 - -
Vium15416g00004 919 FunFam Uncharacterized protein 291 587 - -
Vium15416g00004 919 ProSiteProfiles Leucine-rich repeat profile. 391 414 IPR001611 GO:0005515
Vium15416g00004 919 ProSitePatterns Tyrosine protein kinases specific active-site signature. 783 795 IPR008266 GO:0004672|GO:0006468
Vium15416g00004 919 SUPERFAMILY L domain-like 38 362 - -
Vium15416g00004 919 PRINTS Leucine-rich repeat signature 392 405 - -
Vium15416g00004 919 PRINTS Leucine-rich repeat signature 508 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium15416g00004 Vium-Chr15416 87642 90856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium15416g00004 20 831 Receptor kinase-like Gene Family AT4G08850 40.065 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium15416g00004 Pkinase 3.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium15416g00004 - - gmx:100809509 1325.84